Package: RegionalST
Type: Package
Title: Investigating regions of interest and performing regional cell
        type-specific analysis with spatial transcriptomics data
Version: 1.9.0
Authors@R: person(given = "Ziyi", 
                  family = "Li", 
                  role=c("aut", "cre"), 
                  email="zli16@mdanderson.org")
Description: This package analyze spatial transcriptomics data through
        cross-regional cell type-specific analysis. It selects regions
        of interest (ROIs) and identifys cross-regional cell
        type-specific differential signals. The ROIs can be selected
        using automatic algorithm or through manual selection. It
        facilitates manual selection of ROIs using a shiny application.
License: GPL-3
Encoding: UTF-8
LazyData: FALSE
RoxygenNote: 7.3.2
biocViews: Spatial, Transcriptomics, Reactome, KEGG
Depends: R (>= 4.3.0)
Imports: stats, grDevices, utils, ggplot2, dplyr, scater, gridExtra,
        BiocStyle, BayesSpace, fgsea, magrittr, SingleCellExperiment,
        RColorBrewer, Seurat, S4Vectors, tibble, TOAST, assertthat,
        colorspace, shiny, SummarizedExperiment
Suggests: knitr, rmarkdown, gplots, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev libglpk-dev make
        libharfbuzz-dev libicu-dev libjpeg-dev libpng-dev libtiff-dev
        libwebp-dev libxml2-dev libssl-dev python3 zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:24:31 UTC
RemoteUrl: https://github.com/bioc/RegionalST
RemoteRef: HEAD
RemoteSha: e3a23f60f3d70408e6f93e2a9812ff7040b04996
NeedsCompilation: no
Packaged: 2026-03-06 08:17:25 UTC; root
Author: Ziyi Li [aut, cre]
Maintainer: Ziyi Li <zli16@mdanderson.org>
Built: R 4.6.0; ; 2026-03-06 08:20:01 UTC; windows
