Package: PeacoQC
Title: Peak-based selection of high quality cytometry data
Version: 1.21.0
Authors@R: 
    person(given = "Annelies",
           family = "Emmaneel",
           role = c("aut", "cre"),
           email = "annelies.emmaneel@hotmail.com")
Description: This is a package that includes pre-processing and quality
        control functions that can remove margin events, compensate and
        transform the data and that will use PeacoQCSignalStability for
        quality control. This last function will first detect peaks in
        each channel of the flowframe. It will remove anomalies based
        on the IsolationTree function and the MAD outlier detection
        method. This package can be used for both flow- and mass
        cytometry data.
Encoding: UTF-8
License: GPL (>=3)
URL: http://github.com/saeyslab/PeacoQC
BugReports: http://github.com/saeyslab/PeacoQC/issues
Depends: R (>= 4.0)
Imports: circlize, ComplexHeatmap, flowCore, flowWorkspace, ggplot2,
        grDevices, grid, gridExtra, methods, plyr, stats, utils
RoxygenNote: 7.3.3
Suggests: knitr, rmarkdown, BiocStyle
VignetteBuilder: knitr
biocViews: FlowCytometry, QualityControl, Preprocessing, PeakDetection
Config/pak/sysreqs: libpng-dev libxml2-dev perl zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-02-10 15:01:37 UTC
RemoteUrl: https://github.com/bioc/PeacoQC
RemoteRef: HEAD
RemoteSha: 07d9ad6113c25d2c20c68b0eaa36ced205bf564d
NeedsCompilation: no
Packaged: 2026-03-16 08:01:02 UTC; root
Author: Annelies Emmaneel [aut, cre]
Maintainer: Annelies Emmaneel <annelies.emmaneel@hotmail.com>
Built: R 4.6.0; ; 2026-03-16 08:02:50 UTC; windows
