# Differential Expressed Windows Based on Negative Binomial Distribution

## Documentation for package ‘DEWSeq’ version 1.25.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

DESeqDataSetFromSlidingWindows | create DESeq data object
extractRegions | extract significant regions
filterCounts | filter count data
resultsDEWSeq | extract DEWseq results
slbpDds | ENCODE eCLIP data SLBP in K562
slbpRegions | ENCODE eCLIP data SLBP in K562
slbpVst | ENCODE eCLIP data SLBP in K562
slbpWindows | ENCODE eCLIP data SLBP in K562
SLBP_K562_w50s20 | ENCODE eCLIP data for SLBP in K562, low count filtered
toBED | windows/regions to BED
topWindowStats | stats for the top windows in each region