Package: DEScan2
Type: Package
Title: Differential Enrichment Scan 2
Version: 1.31.0
Date: 2025-07-31
Authors@R: c(
    person("Dario", "Righelli", role=c("aut", "cre"), 
            email="dario.righelli@gmail.com"),
    person("John", "Koberstein", role="aut", email="jnkoberstein@gmail.com"),
    person("Bruce", "Gomes", role="aut", email="bruce.gomes@wsu.edu"),
    person("Nancy", "Zhang", role="aut", email="nzh@wharton.upenn.edu"),
    person("Claudia", "Angelini", role="aut", email="c.angelini@na.iac.cnr.it"),
    person("Lucia", "Peixoto", role="aut", email="lucia.peixoto@wsu.edu"),
    person("Davide", "Risso", role="aut", email="risso.davide@gmail.com>")
    )
Maintainer: Dario Righelli <dario.righelli@gmail.com>
Description: Integrated peak and differential caller, specifically
        designed for broad epigenomic signals.
Encoding: UTF-8
License: Artistic-2.0
biocViews: ImmunoOncology, PeakDetection, Epigenetics, Software,
        Sequencing, Coverage
Depends: R (>= 3.5), GenomicRanges
Imports: BiocParallel, BiocGenerics, ChIPpeakAnno, data.table,
        DelayedArray, Seqinfo, GenomeInfoDb, GenomicAlignments, glue,
        IRanges, plyr, Rcpp (>= 0.12.13), rtracklayer, S4Vectors (>=
        0.23.19), SummarizedExperiment, tools, utils
LinkingTo: Rcpp, RcppArmadillo
RoxygenNote: 7.3.2
Suggests: BiocStyle, knitr, rmarkdown, testthat, edgeR, limma, EDASeq,
        RUVSeq, RColorBrewer, statmod
VignetteBuilder: knitr
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:43:48 UTC
RemoteUrl: https://github.com/bioc/DEScan2
RemoteRef: HEAD
RemoteSha: 788dce204c5ab6beffb2c2cc9efdf98d83f19afd
NeedsCompilation: yes
Packaged: 2026-03-10 09:15:17 UTC; root
Author: Dario Righelli [aut, cre],
  John Koberstein [aut],
  Bruce Gomes [aut],
  Nancy Zhang [aut],
  Claudia Angelini [aut],
  Lucia Peixoto [aut],
  Davide Risso [aut]
Built: R 4.6.0; x86_64-w64-mingw32; 2026-03-10 09:17:47 UTC; windows
Archs: x64
