# Candidate Driver Analysis

## Documentation for package ‘CaDrA’ version 1.9.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

BRCA_GISTIC_MUT_SIG | Genomic Data from TCGA BRCA MUT + GISTIC
CaDrA | CaDrA Search
calc_rowscore | Calculate row-wise scores of a given binary feature set based on a given scoring method
candidate_search | Candidate Search
CCLE_MUT_SCNA | Genomic Data from CCLE MUT + SCNA
CTNBB1_reporter | Transcriptional Activity of Beta-Catenin in Cancers
generate_permutations | Random permutation matrix generator
meta_plot | Candidate Drivers Search Plot
permutation_plot | Permutation Best Scores Plot
perm_res | Pre-computed permutation results for simulated data ('sim_FS')
prefilter_data | Pre-filter features
sim_FS | Simulated Genomic Data
sim_Scores | Simulated Input Scores
TAZYAP_BRCA_ACTIVITY | YAP/TAZ Activity in TCGA BRCA dataset
topn_best | Top 'N' Best Meta-Features
topn_list | Top-N Results for Simulated Data ('sim_FS')
topn_plot | Top 'N' Plot