94bf0121c6a20d29f930b871a4f92eda *CITATION
ddb0286ad5749b915534e8b3b68c98c7 *DESCRIPTION
68bb9ab215ae4b272ec27b23211bae93 *INDEX
a06878c1a6a07ce1d8981599069e8b04 *LICENSE
67479f378ef3f0aab52c8a12fdb06bac *Meta/Rd.rds
47f9d2899c30fb2643c8bbacb1e21d16 *Meta/data.rds
50a9fa3e1aa2c47fa7bdbd6e6bb8974e *Meta/features.rds
c2a402ff61ab4710b08abc0f75266f35 *Meta/hsearch.rds
7ef3168fe8148f8c1cceadbfb2a3066d *Meta/links.rds
af9bee2bf6ff287465f4932ce61e52d1 *Meta/nsInfo.rds
e90a3f6b38a2a37d50af0eaa225bd3f8 *Meta/package.rds
e2f8a97bdc52989b90be912fa0d44356 *Meta/vignette.rds
d0804a839f9754d8557cf963c0d14fbd *NAMESPACE
fad59674387f98c24c21f8f0359c6381 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/CNEr
5913ef5ff25df742e75818f5c1ea4469 *R/CNEr.rdb
005b905972ae9b1f44c5003a92aa0ad1 *R/CNEr.rdx
ffc9ee5574e7dbceba3ed76ba6ce6d09 *README.md
b9aac139b7de815fc1319d1f33ec7334 *data/CNEDanRer10Hg38.rda
346e1d3e1bac3aefb13b8041ac569810 *data/CNEHg38DanRer10.rda
e19bef8499d96f13c72d3dedef80e64f *data/axisTrack.rda
a2ee4e67ae5ff451b197a823446c1372 *data/cneFinalListDanRer10Hg38.rda
f07a2fbd832ccf6b2510e02770f3f51b *data/cpgIslands.rda
7cafff2d1de75cafd1b12738b210f5fc *data/grangesPairsForDotplot.rda
28f6e0819688ffa970fb265894f8ec30 *data/refGenes.rda
817e0574029172c84424908cdb6288bb *doc/CNEr.R
2de5bf342921f97286a553613e6aa05b *doc/CNEr.Rmd
9345761a8c9cd94e2623eaf2a852027a *doc/CNEr.html
241489acfdeebc6206e9577856d931e5 *doc/PairwiseWholeGenomeAlignment.R
757ca2f473ff91bd78bd8cef0d315e38 *doc/PairwiseWholeGenomeAlignment.Rmd
40e871a51e67dbe8ec3d77c4b0490255 *doc/PairwiseWholeGenomeAlignment.html
3099ae5c658c357e086538ee96b00cf9 *doc/index.html
e1225e2387a670279ab8e2f5695a5b62 *extdata/chr4.hg19.galGal3.net.axt.gz
9c8c4347211a68e2d2bdca8b3eb2a995 *extdata/cne2wBf_AstMex102_danRer10_48_50
144c4e621b5903d66fce90d40ff3452a *extdata/cne2wBf_cteIde1_danRer10_100_100
703b7fae3bd724a255a201e07f0f19ff *extdata/cne2wBf_cypCar1_danRer10_100_100
aad28bc8c6f7865a28ec3b4c06aa7517 *extdata/cne2wBf_danRer10_hg38_45_50
ee3f3bafa1ea2dd69057da90d4df026a *extdata/danRer10.hg38.net.axt
f0c8e5aa59cfa775c42fa54300a7e108 *extdata/danRer10CNE.sqlite
32f9e6948d016e9935633c6f1c34ed43 *extdata/filter_regions.danRer10.bed
8f357f770b042ed678b4f2b38e687053 *extdata/filter_regions.hg38.bed
83a080592fbc9a9e1e3c8045874bc4b6 *extdata/hg38.danRer10.net.axt
109773cc892befc7f16e64051a2f3180 *extdata/rmsk.fa
ecfff71e276939f8799b675c0035c131 *help/AnIndex
209054da86fe12ebd46104fdf578c500 *help/CNEr.rdb
ea214fd602329b25cd3c7603799da984 *help/CNEr.rdx
ad05ba4352beb23620535cf6a1e5a670 *help/aliases.rds
fe2ed99967a1c194546a08672ff7a4bb *help/paths.rds
b9000a7b4f2b88be8e5d046241fe6931 *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
1c8918d97e99ddd46a957a61e9940ad6 *libs/x64/CNEr.dll
d446edd4e801d65321efbd4a11fd1c2d *libs/x64/symbols.rds
ec85324af0f35f446e7f94ec7477fd3c *obsolete/CNEr.Rnw
6922454ebccccaa223412f1e90952a48 *obsolete/alignment.c
3b502ef13330de1cd98dc4288a6f43d1 *obsolete/ceScan.r
d14cd8fb9911e5da6a2ba93af6d5974a *obsolete/ceScanR.r
0b52e0839eedfa011db6788f30472403 *obsolete/class.r
cdd26c6f3a003ce2e80db8921c7a7857 *obsolete/src/ceScan.c
b9b504316a8eeb190646972e165f979f *obsolete/src/ceScanBranch1.c
ed4391ac6a30aa3da32d63d7cbf5b17a *obsolete/src/ceScanBranch2.c
0a1fe70559c587a9104001f5203af75d *obsolete/src/compile
9e3c821c3f64ccfe466aa466d5f82ec5 *scripts/danRer10Pipeline.R
5f67d785a452ecc6f8168088a7b8b0c9 *scripts/prepareData.R
