Package: broadSeq
Title: broadSeq : for streamlined exploration of RNA-seq data
Version: 1.4.0
Authors@R: 
    person("Rishi", "Das Roy", , "rishi.dasroy@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-3276-7279"))
Description: This package helps user to do easily RNA-seq data analysis
        with multiple methods (usually which needs many different input
        formats). Here the user will provid the expression data as a
        SummarizedExperiment object and will get results from different
        methods. It will help user to quickly evaluate different
        methods.
License: MIT + file LICENSE
URL: https://github.com/dasroy/broadSeq
BugReports: https://github.com/dasroy/broadSeq/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
biocViews: GeneExpression, DifferentialExpression, RNASeq,
        Transcriptomics, Sequencing, Coverage, GeneSetEnrichment, GO
Suggests: knitr, limma (>= 3.54.0), rmarkdown, stats (>= 4.2.2), samr
Depends: dplyr, ggpubr, SummarizedExperiment
Imports: BiocStyle, DELocal, EBSeq (>= 1.38.0), DESeq2 (>= 1.38.2),
        NOISeq, forcats (>= 1.0.0), genefilter, ggplot2, ggplotify,
        plyr, clusterProfiler (>= 4.8.2), pheatmap, sechm (>= 1.6.0),
        stringr, purrr (>= 0.3.5), edgeR (>= 3.40.1)
VignetteBuilder: knitr
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libpng-dev
        libxml2-dev libssl-dev perl libnode-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 15:30:34 UTC
RemoteUrl: https://github.com/bioc/broadSeq
RemoteRef: RELEASE_3_22
RemoteSha: f0b150580c87c4cff567561443d3f725dbad01b3
NeedsCompilation: no
Packaged: 2026-01-23 08:32:16 UTC; root
Author: Rishi Das Roy [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3276-7279>)
Maintainer: Rishi Das Roy <rishi.dasroy@gmail.com>
Built: R 4.5.2; ; 2026-01-23 08:34:43 UTC; windows
