Package: fluentGenomics
Type: Package
Title: A plyranges and tximeta workflow
Version: 1.22.0
Authors@R: c(
             person(role = c("aut", "cre"), "Stuart", "Lee", email = "stuart.andrew.lee@gmail.com", comment = c(ORCID = "0000-0003-1179-8436")),
             person(role=c("aut", "ctb"), "Michael", "Love", email = "michaelisaiahlove@gmail.com")
             )
Description: An extended workflow using the plyranges and tximeta
    packages for fluent genomic data analysis. Use tximeta to correctly import 
    RNA-seq transcript  quantifications and summarize them to gene counts for 
    downstream analysis. Use plyranges for clearly expressing operations
    over genomic coordinates and to combine results from differential
    expression and differential accessibility analyses.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
LazyDataCompression: xz
RoxygenNote: 7.0.2
VignetteBuilder: knitr, rmarkdown
Depends: R (>= 4.0)
Imports: plyranges (>= 1.7.7), dplyr, SummarizedExperiment, readr,
        stats, utils
Suggests: knitr, rmarkdown, bookdown, rappdirs, BiocFileCache, DESeq2,
        limma, ggplot2, tidyr, tximeta (>= 1.4.2), macrophage (>=
        1.2.0),
biocViews: Workflow, BasicWorkflow, GeneExpressionWorkflow
Workflow: true
URL: https://github.com/sa-lee/fluentGenomics
BugReports: https://github.com/sa-lee/fluentGenomics/issues
git_url: https://git.bioconductor.org/packages/fluentGenomics
git_branch: RELEASE_3_22
git_last_commit: 9eedd5f
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-11-04
NeedsCompilation: no
Packaged: 2025-11-04 18:08:30 UTC; biocbuild
Author: Stuart Lee [aut, cre] (ORCID: <https://orcid.org/0000-0003-1179-8436>),
  Michael Love [aut, ctb]
Maintainer: Stuart Lee <stuart.andrew.lee@gmail.com>
