Package: RnaSeqGeneEdgeRQL
Title: Gene-level RNA-seq differential expression and pathway analysis
        using Rsubread and the edgeR quasi-likelihood pipeline
Version: 1.34.0
Date: 2025-09-11
Author: Yunshun Chen, Aaron Lun, Gordon Smyth
Maintainer: Yunshun Chen <yuchen@wehi.edu.au>
Description: This workflow package provides, through its vignette, a complete
    case study analysis of an RNA-Seq experiment using the Rsubread and edgeR
    packages. The workflow starts from read alignment and continues on to data
    exploration, to differential expression and, finally, to pathway analysis.
    The analysis includes publication quality plots, GO and KEGG analyses, and
    the analysis of a expression signature as generated by a prior experiment.
Depends: R (>= 3.3.0), edgeR (>= 4.3.6), gplots, org.Mm.eg.db, GO.db,
        BiocStyle
License: Artistic-2.0
VignetteBuilder: knitr
biocViews: Workflow, GeneExpressionWorkflow, ImmunoOncologyWorkflow
Suggests: knitr, knitcitations, rmarkdown
NeedsCompilation: no
URL: http://f1000research.com/articles/5-1438/v2
git_url: https://git.bioconductor.org/packages/RnaSeqGeneEdgeRQL
git_branch: RELEASE_3_22
git_last_commit: 279c21a
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-11-04
Packaged: 2025-11-04 18:11:46 UTC; biocbuild
