"Title","Description","BiocVersion","Genome","SourceType","SourceUrl","SourceVersion","Species","TaxonomyId","Coordinate_1_based","DataProvider","Maintainer","RDataClass","DispatchClass","RDataPath","Tags","Notes"
"crispr_20Q3","(CERES) Batch and off-target corrected CRISPR-Cas9 gene, knockdout dependency data for 18119 genes, 769 cell lines, 29 primary diseases and 26 lineages.","3.12","","CSV","https://ndownloader.figshare.com/files/24613292","Sep 15 2020","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@kuleuven.vib.be>","tibble","Rda","depmap/crispr_20Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 20Q3 release"
"copyNumber_20Q3","WES log copy number data for 27639 genes, 1745 cell lines, 35 primary diseases and 37 lineages.","3.12","","CSV","https://ndownloader.figshare.com/files/24613352","Sep 15 2020","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@kuleuven.vib.be>","tibble","Rda","depmap/copyNumber_20Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 20Q3 release"
"TPM_20Q3","CCLE 'Transcript Per Million' (TPM) RNAseq gene expression data (in scale scale (log2(TPM+1))) for protein coding genes from 19144 genes, 1304 cancer cell lines, 32 primary diseases and 34 lineages.","3.12","","CSV","https://ndownloader.figshare.com/files/24613325","Sep 15 2020","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@kuleuven.vib.be>","tibble","Rda","depmap/TPM_20Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 20Q3 release"
"mutationCalls_20Q3","Merged mutation calls (for coding region, germline filtered) and includes data from 18802 genes, 1741 cell lines, 35 primary diseases and 37 lineages. ","3.12","","CSV","https://ndownloader.figshare.com/files/24613355","Sep 15 2020","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@kuleuven.vib.be>","tibble","Rda","depmap/mutationCalls_20Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 20Q3 release"
"metadata_20Q3","Metadata for cell lines in the 20Q3 DepMap release, for 0 genes, 1804 cell lines, 35 primary diseases and 38 lineages.","3.12","","CSV","https://ndownloader.figshare.com/files/24613394","Sep 15 2020","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@kuleuven.vib.be>","tibble","Rda","depmap/metadata_20Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 20Q3 release"
