"Title","Description","BiocVersion","Genome","SourceType","SourceUrl","SourceVersion","Species","TaxonomyId","Coordinate_1_based","DataProvider","Maintainer","RDataClass","DispatchClass","RDataPath","Tags","Notes"
"crispr_20Q2","(CERES) Batch and off-target corrected CRISPR-Cas9 gene knockdout dependency data for 18119 genes, 769 cell lines, 29 primary diseases and 26 lineages.","3.12","","CSV","https://ndownloader.figshare.com/files/22629068","May 15 2020","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/crispr_20Q2.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 20Q2 release"
"copyNumber_20Q2","WES log copy number data for 27639 genes, 1745 cell lines, 35 primary diseases and 37 lineages.","3.12","","CSV","https://ndownloader.figshare.com/files/22629107","May 15 2020","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/copyNumber_20Q2.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 20Q2 release"
"TPM_20Q2","CCLE 'Transcript Per Million' (TPM) RNAseq gene expression data (in scale scale (log2(TPM+1))) for protein coding genes from 19144 genes, 1304 cancer cell lines, 32 primary diseases and 34 lineages.","3.12","","CSV","https://ndownloader.figshare.com/files/22629092","May 15 2020","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/TPM_20Q2.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 20Q2 release"
"mutationCalls_20Q2","Merged mutation calls (for coding region, germline filtered) and includes data from 18802 genes, 1741 cell lines, 35 primary diseases and 37 lineages. ","3.12","","CSV","https://ndownloader.figshare.com/files/22629110","May 15 2020","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/mutationCalls_20Q2.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 20Q2 release"
"metadata_20Q2","Metadata for cell lines in the 20Q2 DepMap release, for 0 genes, 1804 cell lines, 35 primary diseases and 38 lineages.","3.12","","CSV","https://ndownloader.figshare.com/files/22629137","May 15 2020","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/metadata_20Q2.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 20Q2 release"
"proteomic_20Q2","Quantitative profiling of 12399 proteins in 375 cell lines, 24 primary diseases and 27 lineages by mass spectrometry across 375 cell lines from the Gygi lab.","3.12","","CSV","https://gygi.med.harvard.edu/sites/gygi.med.harvard.edu/files/documents/protein_quant_current_normalized.csv.gz","May 15 2020","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/proteomic_20Q2.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 20Q2 release"
