"Title","Description","BiocVersion","Genome","SourceType","SourceUrl","SourceVersion","Species","TaxonomyId","Coordinate_1_based","DataProvider","Maintainer","RDataClass","DispatchClass","RDataPath","Tags","Notes"
"crispr_22Q2","(CERES) Batch and off-target corrected CRISPR-Cas9 gene, knockdout dependency data for 17386 genes, 1086 cell lines, 31 primary diseases and 28 lineages.","3.16","","CSV","https://ndownloader.figshare.com/files/34990036","May 9 2022","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theo.killian@vib.be>","tibble","Rda","depmap/crispr_22Q2.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerData OrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 22Q2 release"
"copyNumber_22Q2","Inferred log copy number data for 25368 genes, 1766 cell lines, 33 primary diseases and 30 lineages.","3.16","","CSV","https://ndownloader.figshare.com/files/34989937","May 9 2022","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theo.killian@vib.be>","tibble","Rda","depmap/copyNumber_22Q2.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerData OrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 22Q2 release"
"TPM_22Q2","CCLE 'Transcript Per Million' (TPM) RNAseq gene expression data (in scale scale (log2(TPM+1))) for protein coding genes from 19221 genes, 1406 cell lines, 33 primary diseases and 30 lineages.","3.16","","CSV","https://ndownloader.figshare.com/files/34989919","May 9 2022","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theo.killian@vib.be>","tibble","Rda","depmap/TPM_22Q2.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerData OrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 22Q2 release"
"mutationCalls_22Q2","CCLE mutation calls (for coding region, germline filtered) and includes data from 18784 genes, 1771 cell lines, 33 primary diseases and 30 lineages.","3.16","","CSV","https://ndownloader.figshare.com/files/34989940","May 9 2022","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theo.killian@vib.be>","tibble","Rda","depmap/mutationCalls_22Q2.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerData OrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 22Q2 release"
"metadata_22Q2","Metadata for cell lines in the 22Q2 DepMap release, for 0 genes, 1840 cell lines, 33 primary diseases and 30 lineages.","3.16","","CSV","https://ndownloader.figshare.com/files/35020903","May 9 2022","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theo.killian@vib.be>","tibble","Rda","depmap/metadata_22Q2.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerData OrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 22Q2 release"
"achilles_22Q2","Metadata for DepMap’s cancer models/cell lines, specific to Project Achilles’ 22Q2 CRISPR screens.","3.16","","CSV","https://ndownloader.figshare.com/files/34989901","May 9 2022","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theo.killian@vib.be>","tibble","Rda","depmap/achilles_22Q2.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerData OrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 22Q2 release"
