"Title","Description","BiocVersion","Genome","SourceType","SourceUrl","SourceVersion","Species","TaxonomyId","Coordinate_1_based","DataProvider","Maintainer","RDataClass","DispatchClass","RDataPath","Tags","Notes"
"rnai_19Q3","(DEMETER2) Batch and off-target corrected RNAi gene knockdown dependency data for 17309 genes, 712 cancer cell lines, 31 primary Diseases and 31 lineages.","3.10","","CSV","https://ndownloader.figshare.com/files/13515395","Aug 7 2019","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/rnai_19Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 19Q3 release"
"crispr_19Q3","(CERES) Batch and off-target corrected CRISPR-Cas9 gene knockdout dependency data for 18333 genes, 625 cell lines, 28 primary diseases and 29 lineages.","3.10","","CSV","https://ndownloader.figshare.com/files/16757666","Aug 7 2019","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/crispr_19Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 19Q3 release"
"copyNumber_19Q3","WES log copy number data for 27562 genes, 1657 cell lines, 36 primary diseases and 34 lineages.","3.10","","CSV","https://ndownloader.figshare.com/files/16757699","Aug 7 2019","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/copyNumber_19Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 19Q3 release"
"RPPA_19Q3","Reverse Phase Protein Array (RPPA) Western Blot expression data from 214 genes, 899 cancer cell lines, 28 primary diseases and 28 lineages.","3.10","","CSV","https://depmap.org/portal/download/api/download/external?file_name=ccle%2Fccle_2019%2FCCLE_RPPA_20181003.csv","Aug 7 2019","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/RPPA_19Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 19Q3 release"
"TPM_19Q3","CCLE 'Transcript Per Million' (TPM) RNAseq gene expression data (in scale scale (log2(TPM+1))) for protein coding genes from 19144 genes, 1210 cancer cell lines, 32 primary diseases and 33 lineages.","3.10","","CSV","https://ndownloader.figshare.com/files/16757690","Aug 7 2019","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/TPM_19Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 19Q3 release"
"mutationCalls_19Q3","Merged mutation calls (for coding region, germline filtered) and includes data from 18798 genes, 1656 cell lines, 36 primary diseases and 34 lineages. ","3.10","","CSV","https://ndownloader.figshare.com/files/16757702","Aug 7 2019","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/mutationCalls_19Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 19Q3 release"
"metadata_19Q3","Metadata for cell lines in the 19Q1 DepMap release, for 0 genes, 1736 cell lines, 37 primary diseases and 34 lineages.","3.10","","CSV","https://ndownloader.figshare.com/files/16757723","Aug 7 2019","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/metadata_19Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 19Q3 release"
"drug_sensitivity_19Q3","Drug sensitivity data for cancer cell lines derived from replicate collapsed logfold change values relative to DMSO, corrected for experimental confounders using ComBat representing 4686 compounds, 578 cell lines, 23 primary diseases and 25 lineages","3.10","","CSV","https://ndownloader.figshare.com/files/17008628","Aug 7 2019","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/drug_sensitivity_19Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 19Q3 release"
