"Title","Description","BiocVersion","Genome","SourceType","SourceUrl","SourceVersion","Species","TaxonomyId","Coordinate_1_based","DataProvider","Maintainer","RDataClass","DispatchClass","RDataPath","Tags","Notes"
"crispr_21Q3","(CERES) Batch and off-target corrected CRISPR-Cas9 gene, knockdout dependency data for 17393 genes, 1032 cell lines, 32 primary diseases and 30 lineages.","3.14","","CSV","https://ndownloader.figshare.com/files/29125323","Aug 20 2021","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theo.killian@kuleuven.be>","tibble","Rda","depmap/crispr_21Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerData OrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 21Q3 release"
"copyNumber_21Q3","WES log copy number data for 27562 genes, 1741 cell lines, 35 primary diseases and 37 lineages.","3.14","","CSV","https://ndownloader.figshare.com/files/29125230","Aug 20 2021","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theo.killian@kuleuven.be>","tibble","Rda","depmap/copyNumber_21Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerData OrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 21Q3 release"
"TPM_21Q3","CCLE 'Transcript Per Million' (TPM) RNAseq gene expression data (in scale scale (log2(TPM+1))) for protein coding genes from 19177 genes, 1377 cell lines, 33 primary diseases and 37 lineages.","3.14","","CSV","https://ndownloader.figshare.com/files/29124747","Aug 20 2021","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theo.killian@kuleuven.be>","tibble","Rda","depmap/TPM_21Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerData OrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 21Q3 release"
"mutationCalls_21Q3","CCLE mutation calls (for coding region, germline filtered) and includes data from 18784 genes, 1746 cell lines, 35 primary diseases and 37 lineages.","3.14","","CSV","https://ndownloader.figshare.com/files/29125233","Aug 20 2021","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theo.killian@kuleuven.be>","tibble","Rda","depmap/mutationCalls_21Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerData OrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 21Q3 release"
"metadata_21Q3","Metadata for cell lines in the 21Q3 DepMap release, for 0 genes, 2944 cell lines, 43 primary diseases and 47 lineages.","3.14","","CSV","https://ndownloader.figshare.com/files/29162481","Aug 20 2021","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theo.killian@kuleuven.be>","tibble","Rda","depmap/metadata_21Q3.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerData OrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 21Q3 release"
