"Title","Description","BiocVersion","Genome","SourceType","SourceUrl","SourceVersion","Species","TaxonomyId","Coordinate_1_based","DataProvider","Maintainer","RDataClass","DispatchClass","RDataPath","Tags","Notes"
"crispr_19Q4","(CERES) Batch and off-target corrected CRISPR-Cas9 gene knockdout dependency data for 18333 genes, 689 cell lines, 29 primary diseases and 26 lineages.","3.11","","CSV","https://ndownloader.figshare.com/files/20234073","Dec 20 2019","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/crispr_19Q4.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 19Q4 release"
"copyNumber_19Q4","WES log copy number data for 27639 genes, 1682 cell lines, 35 primary diseases and 36 lineages.","3.11","","CSV","https://ndownloader.figshare.com/files/20234367","Dec 20 2019","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/copyNumber_19Q4.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 19Q4 release"
"TPM_19Q4","CCLE 'Transcript Per Million' (TPM) RNAseq gene expression data (in scale scale (log2(TPM+1))) for protein coding genes from 19144 genes, 1249 cancer cell lines, 32 primary diseases and 34 lineages.","3.11","","CSV","https://ndownloader.figshare.com/files/20234346","Dec 20 2019","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/TPM_19Q4.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 19Q4 release"
"mutationCalls_19Q4","Merged mutation calls (for coding region, germline filtered) and includes data from 18798 genes, 1666 cell lines, 35 primary diseases and 36 lineages. ","3.11","","CSV","https://ndownloader.figshare.com/files/20274747","Dec 20 2019","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/mutationCalls_19Q4.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 19Q4 release"
"metadata_19Q4","Metadata for cell lines in the 19Q1 DepMap release, for 0 genes, 1756 cell lines, 35 primary diseases and 37 lineages.","3.11","","CSV","https://ndownloader.figshare.com/files/20274744","Dec 20 2019","Homo sapiens",9606,TRUE,"Broad Institute","Theo Killian <theodore.killian@uclouvain.be>","tibble","Rda","depmap/metadata_19Q4.rda","ExperimentHub, ExperimentData, ReproducibleResearch, RepositoryData, AssayDomainData, CopyNumberVariationData, DiseaseModel, CancerData, BreastCancerData, ColonCancerData, KidneyCancerData, LeukemiaCancerData, LungCancerData, OvarianCancerData, ProstateCancerDataOrganismData, Homo_sapiens_Data, PackageTypeData, SpecimenSource, CellCulture, Genome, Proteome, StemCell, Tissue","This dataset is from the 19Q4 release"
