"Title","Description","BiocVersion","Genome","SourceType","SourceUrl","SourceVersion","Species","TaxonomyId","Coordinate_1_based","DataProvider","Maintainer","RDataClass","DispatchClass","RDataPath","Note"
"Phylogenetic profiles of human AMPK-TOR pathway","The phylogenetic profiles of 147 human proteins in the AMPK-TOR pathway across 83 species in the three domains of life. This data set contains a phylogenetic profile file, a multiple fasta file and a protein annotation file. Reference: Valentin Roustan, Arpit Jain, Markus Teige, Ingo Ebersberger, Wolfram Weckwerth, An evolutionary perspective of AMPK–TOR signaling in the three domains of life, Journal of Experimental Botany, Volume 67, Issue 13, June 2016, Pages 3897–3907, https://doi.org/10.1093/jxb/erw211","3.21",NA,"Zip","https://github.com/BIONF/phyloprofile-data/blob/master/ampk-tor.zip","v2",NA,NA,NA,"Applied Bioinformatics Dept., Goethe University Frankfurt","Vinh Tran <tran@bio.uni-frankfurt.de>","data.frame","Rda","PhyloProfileData/ampkTorPhyloProfile.RData",NA
"FASTA sequences for proteins in the phylogenetic profiles of human AMPK-TOR pathway","The phylogenetic profiles of 147 human proteins in the AMPK-TOR pathway across 83 species in the three domains of life. This data set contains a phylogenetic profile file, a multiple fasta file and a protein annotation file. Reference: Valentin Roustan, Arpit Jain, Markus Teige, Ingo Ebersberger, Wolfram Weckwerth, An evolutionary perspective of AMPK–TOR signaling in the three domains of life, Journal of Experimental Botany, Volume 67, Issue 13, June 2016, Pages 3897–3907, https://doi.org/10.1093/jxb/erw211","3.21",NA,"Zip","https://github.com/BIONF/phyloprofile-data/blob/master/ampk-tor.zip","v2",NA,NA,NA,"Applied Bioinformatics Dept., Goethe University Frankfurt","Vinh Tran <tran@bio.uni-frankfurt.de>","AAStringSet","Rda","PhyloProfileData/ampkTorFasta.RData",NA
"Domain annotations for proteins in the phylogenetic profiles of human AMPK-TOR pathway","The phylogenetic profiles of 147 human proteins in the AMPK-TOR pathway across 83 species in the three domains of life. This data set contains a phylogenetic profile file, a multiple fasta file and a protein annotation file. Reference: Valentin Roustan, Arpit Jain, Markus Teige, Ingo Ebersberger, Wolfram Weckwerth, An evolutionary perspective of AMPK–TOR signaling in the three domains of life, Journal of Experimental Botany, Volume 67, Issue 13, June 2016, Pages 3897–3907, https://doi.org/10.1093/jxb/erw211","3.21",NA,"Zip","https://github.com/BIONF/phyloprofile-data/blob/master/ampk-tor.zip","v2",NA,NA,NA,"Applied Bioinformatics Dept., Goethe University Frankfurt","Vinh Tran <tran@bio.uni-frankfurt.de>","data.frame","Rda","PhyloProfileData/ampkTorDomain.RData",NA
"Phylogenetic profiles of BUSCO arthropoda proteins","The phylogenetic profiles of 1011 BUSCO arthropoda ortholog groups across 88 species in the three domains of life. This data set contains a phylogenetic profile file, a multiple fasta file and a protein annotation file.","3.21",NA,"Zip","https://github.com/BIONF/phyloprofile-data/blob/master/arthropoda.zip","v2",NA,NA,NA,"Applied Bioinformatics Dept., Goethe University Frankfurt","Vinh Tran <tran@bio.uni-frankfurt.de>","data.frame","Rda","PhyloProfileData/arthropodaPhyloProfile.RData",NA
"FASTA sequences for proteins in the phylogenetic profiles of BUSCO arthropoda proteins","The phylogenetic profiles of 1011 BUSCO arthropoda ortholog groups across 88 species in the three domains of life. This data set contains a phylogenetic profile file, a multiple fasta file and a protein annotation file.","3.21",NA,"Zip","https://github.com/BIONF/phyloprofile-data/blob/master/arthropoda.zip","v2",NA,NA,NA,"Applied Bioinformatics Dept., Goethe University Frankfurt","Vinh Tran <tran@bio.uni-frankfurt.de>","AAStringSet","Rda","PhyloProfileData/arthropodaFasta.RData",NA
"Domain annotations for proteins in the phylogenetic profiles of BUSCO arthropoda proteins","The phylogenetic profiles of 1011 BUSCO arthropoda ortholog groups across 88 species in the three domains of life. This data set contains a phylogenetic profile file, a multiple fasta file and a protein annotation file.","3.21",NA,"Zip","https://github.com/BIONF/phyloprofile-data/blob/master/arthropoda.zip","v2",NA,NA,NA,"Applied Bioinformatics Dept., Goethe University Frankfurt","Vinh Tran <tran@bio.uni-frankfurt.de>","data.frame","Rda","PhyloProfileData/arthropodaDomain.RData",NA
