Package: OSCA.multisample
Title: OSCA for Multiple Samples
Version: 1.18.0
Date: 2025-01-20
Authors@R: c( 
        person('Robert', 'Amezquita', role = c('aut')), 
        person('Aaron', 'Lun', role = c('aut')),
        person('Stephanie', 'Hicks', role = 'aut'), 
        person('Raphael', 'Gottardo', role = 'aut'),
        person("Alan", "O'Callaghan", role = 'cre', email = "alan.ocallaghan@outlook.com")
    )
Description: 
    Deploys the multi-sample analysis chapters for the "Orchestrating Single Cell Analysis with Bioconductor" book.
    This describes the handling of multiple samples in a single-cell RNA-seq analysis, 
    starting with integration of multiple datasets into a common space for consistent analyses,
    differential expression comparisons between conditions based on pseudo-bulk samples,
    and differential abundance analyses for cell subpopulations.
    It is intended for readers who are already familiar with basic single-cell analyses, possibly after reading some of the prior books in this collection.
Depends: batchelor, BiocSingular, bluster, DropletUtils, edgeR,
        gridExtra, igraph, MouseGastrulationData, pheatmap, rebook,
        rmarkdown, Rtsne, scater, scran, scuttle, SingleR,
        TENxPBMCData, TSCAN, uwot, viridis
Imports: OSCA.workflows
Suggests: OSCA.basic, rmarkdown, knitr
VignetteBuilder: knitr
License: CC BY
URL: https://github.com/OSCA-source/OSCA.multisample
biocViews: ImmunoOncologyWorkflow, Workflow, SingleCellWorkflow
git_url: https://git.bioconductor.org/packages/OSCA.multisample
git_branch: RELEASE_3_22
git_last_commit: 21ecf56
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-11-03
NeedsCompilation: no
Packaged: 2025-11-03 13:24:00 UTC; biocbuild
Author: Robert Amezquita [aut],
  Aaron Lun [aut],
  Stephanie Hicks [aut],
  Raphael Gottardo [aut],
  Alan O'Callaghan [cre]
Maintainer: Alan O'Callaghan <alan.ocallaghan@outlook.com>
