Package: scmeth
Type: Package
Title: Functions to conduct quality control analysis in methylation
        data
Version: 1.30.0
Author: Divy Kangeyan <divyswar01@g.harvard.edu>
Maintainer: Divy Kangeyan <divyswar01@g.harvard.edu>
Depends: R (>= 3.5.0)
Imports: BiocGenerics, bsseq, AnnotationHub, Seqinfo, GenomicRanges,
        reshape2, stats, utils, BSgenome, DelayedArray (>= 0.5.15),
        annotatr, SummarizedExperiment (>= 1.5.6), GenomeInfoDb,
        Biostrings, DT, HDF5Array (>= 1.7.5)
Suggests: knitr, rmarkdown, BSgenome.Mmusculus.UCSC.mm10,
        BSgenome.Hsapiens.NCBI.GRCh38,
        TxDb.Hsapiens.UCSC.hg38.knownGene, org.Hs.eg.db, Biobase,
        ggplot2, ggthemes
Description: Functions to analyze methylation data can be found here.
             Some functions are relevant for single cell methylation data but most other
             functions can be used for any  methylation data.
             Highlight of this workflow is the comprehensive quality control report.
biocViews: DNAMethylation, QualityControl, Preprocessing, SingleCell,
        ImmunoOncology
BugReports: https://github.com/aryeelab/scmeth/issues
License: GPL-2
RoxygenNote: 7.3.2
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/scmeth
git_branch: RELEASE_3_22
git_last_commit: 0e01390
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 06:21:09 UTC; biocbuild
