2af2748d4fe0d385a5d2ca087471ff49 *DESCRIPTION
b323ddba41000281ca1df1e06b972475 *LICENSE
5c497544b39f56cc4d204d2a0f482f69 *LICENSE.md
a4bafcc22427c77eec2bc5df8ec58f33 *NAMESPACE
5ab83a1bfa68d2110d84b32eda7c93de *NEWS.md
082233753f442657676c7158763e4d4b *R/JRF_internal.R
948cbcde353d7bd72de5572848565184 *R/NetworkSet.R
df600781cdf6cbb79e6fdd9496ee6b39 *R/PCzinb_internal.R
f86111e2071a858b714f2184d59ec7db *R/ZILGM_internal.R
104b663300279ab5a4c517d10a3de4fc *R/classify_edges.R
de1ee8fddfe8c8e4feb20a1fa498bdcb *R/community_path.R
d27bbb7641fe218aa0bca06f56964a63 *R/community_similarity.R
19b2afcdf4b763c174cec00338afea56 *R/compare_consensus.R
428e00f6888ffe1229ac8f50accd8779 *R/compute_community_metrics.R
03f55d7dc15e31f8119268902c50575e *R/compute_topology_metrics.R
75963f0a7a7cf427c359b0a24a4beea7 *R/create_consensus.R
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8a0f5dee8624a26b99ff6ae9042efd70 *R/cutoff_adjacency.R
90326ad5588b3aa35dd873bab4e46786 *R/download_Atlas.R
fc0b91700c4192961118d89e3f090bc6 *R/earlyj.R
48cd1ba9bfca9e0b8594d9edccadd1fa *R/edge_mining.R
a86956e9d35df671289f29ebed772227 *R/generate_adjacency.R
98b5d07b15306b2d24a569ef244552a4 *R/infer_networks.R
e6fa1b1705d6c53cf1e8e308621095b4 *R/init_py.R
a1248834fe2b3dfd6e601d3d47cf7907 *R/plotROC.R
e9896cf9c9c445ff5051363711be4433 *R/plot_community_comparison.R
551a2e5341cb83406d308773251f89f4 *R/plot_network_comparison.R
bba0cde76d6b36fe4c044459c5a013a7 *R/plotg.R
59c899c8c2c77940138cde6e08eb5216 *R/pscores.R
7a05579c4ca4bf299b20d9695f0269ec *R/selgene.R
d5aa4394ac1b8dd47eaac1d873e45bb0 *R/stringdb_adjacency.R
7cd1fefe806772370125cca79175d127 *R/symmetrize.R
e7b4c01b46a6754a5f3c974e6d8fc7ca *R/toy_adj_matrix.R
6601c2e8c33c9459482faba48567cc9a *R/toy_counts.R
f79bce976f56afaf8172c2858a6992c7 *R/utils.R
3230cd10a23357e279d94af5f3fb61fd *R/zinb_simdata.R
7176054da021f11bd0ef2be7c6363cd1 *R/zzz.R
631db3f0f31c7e823b042bc8b37ddbb9 *README.md
aabec54c1b971ffdeab3891265433853 *build/vignette.rds
63890958a553b80c9c0c6210c4303cd9 *data-raw/exdata.R
ac5e9f6411f4e9a4bab93c43839d98f4 *data/toy_adj_matrix.rda
5aa4f18e884affd846791edcd4137be9 *data/toy_counts.rda
243e1a98c1382c55e5cea941c7b3a93f *inst/CITATION
ddcdd610f1f2e7d39a4756f0086caf77 *inst/doc/case_study.R
5df5920bfc08c341937af54b3c859805 *inst/doc/case_study.Rmd
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3763dca822681e68bd9cd3c805a9a0d4 *inst/doc/simulation_study.Rmd
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25ba3c069dae8b588d2d7967ad33cd6d *man/PCzinb.Rd
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502a0c5aa6cf59f327eeb2dda9358fb9 *man/compute_community_metrics.Rd
55637552b1a62150537374cd30baf9a3 *man/compute_topology_metrics.Rd
5666a396319503b5ad6ed71bf1bafd9a *man/create_consensus.Rd
589aba16b92284c4e87e6405327a3cc4 *man/create_mae.Rd
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6292517bce938c6310d4ab6c400a2c36 *man/nb.OptimizeDispersion.Rd
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a0c5af9fb65b21d1199a5f378b2e7a18 *man/selgene.Rd
6f410ebdbe95c4c343e2fb28e390c5bb *man/stringdb_adjacency.Rd
d19cfd29bb5e3fc038966bf348bdcee4 *man/symmetrize.Rd
16ab1fc967eaf19c136bbf9dd04b520d *man/toy_adj_matrix.Rd
37d9fc6cb164c987efded021e0729137 *man/toy_counts.Rd
39821a8c07995236717143ecafefeeb5 *man/zinb.regression.parseModel.Rd
e75613423cc97c304a5e4c5ab94f5f60 *man/zinb0.noT.Rd
67b9ceebe025cf5bf3b627ee7503670f *man/zinb1.noT.Rd
8d852beb417740d976c6a5c05eb62286 *man/zinbOptimizeDispersion.Rd
17ca2951989878f17c6d4d2985f224f7 *man/zinb_simdata.Rd
f42bb09a2945790aca755ca67e428deb *src/init.c
9f5272cf23a6a93b4d55a04933636bbf *src/regTree.c
3ecdba4793e99af7b549865898844527 *src/regrf.c
10196665731a0c194de9d21faea52d78 *src/rf.h
5f299dc0ae73dd8176a0eaa95b1917a9 *tests/testthat.R
355d8a557d66ed4d8dff470c898b417e *tests/testthat/test-algorithm-internals.R
534d9cb688ea2748921e165c801d982a *tests/testthat/test-community-topology.R
2764c6f016a56f0387a3798020d8ea38 *tests/testthat/test-network-inference.R
bfa400f8eee04fe524bbb0f622e982c4 *tests/testthat/test-network-processing.R
419129d878cb20cedf61f119b9f1f734 *tests/testthat/test-utilities.R
5df5920bfc08c341937af54b3c859805 *vignettes/case_study.Rmd
3763dca822681e68bd9cd3c805a9a0d4 *vignettes/simulation_study.Rmd
