bibentry(
  bibtype = "Manual",
  title = "scGraphVerse: A Gene Regulatory Network Analysis Package",
  author = "Francesco Cecere",
  year = "2024",
  note = "R package version 0.99.0",
  url = "https://ngsFC.github.io/scGraphVerse",
  textVersion = paste(
    "Cecere, F. (2024).",
    "scGraphVerse: A Gene Regulatory Network Analysis Package.",
    "R package version 0.99.0.",
    "URL: https://ngsFC.github.io/scGraphVerse"
  )
)

# Citation for integrated ZILGM functions
bibentry(
  bibtype = "Article",
  title = "Zero-inflated latent Gaussian mixture models for inference of gene regulatory networks",
  author = c(
    person("Beomjin", "Park"),
    person("Hosik", "Choi"),
    person("Changyi", "Park")
  ),
  journal = "Bioinformatics",
  year = "2021",
  volume = "37",
  pages = "3085-3092",
  doi = "10.1093/bioinformatics/btab293",
  textVersion = paste(
    "Park, B., Choi, H., & Park, C. (2021).",
    "Zero-inflated latent Gaussian mixture models for inference of gene regulatory networks.",
    "Bioinformatics, 37(18), 3085-3092.",
    "doi:10.1093/bioinformatics/btab293"
  )
)

# Citation for integrated JRF functions
bibentry(
  bibtype = "Article",
  title = "Integrative random forest for gene regulatory network inference",
  author = c(
    person("Francesca", "Petralia"),
    person("Pei", "Wang"),
    person("Jiayu", "Yang"),
    person("Zhidong", "Tu")
  ),
  journal = "Bioinformatics",
  year = "2015",
  volume = "31",
  pages = "i197-i205",
  doi = "10.1093/bioinformatics/btv268",
  textVersion = paste(
    "Petralia, F., Wang, P., Yang, J., & Tu, Z. (2015).",
    "Integrative random forest for gene regulatory network inference.",
    "Bioinformatics, 31(12), i197-i205.",
    "doi:10.1093/bioinformatics/btv268"
  )
)

# Citation for INet-Tool
bibentry(
  bibtype = "Article",
  title = "A new consensus-based method for biomarker discovery from networks",
  author = c(
    person("Valeria", "Policastro"),
    person("Dario", "Righelli"),
    person("Annamaria", "Carissimo"),
    person("Luisa", "Cutillo")
  ),
  journal = "BMC Bioinformatics",
  year = "2021",
  volume = "22",
  pages = "1-18",
  doi = "10.1186/s12859-021-04441-8",
  textVersion = paste(
    "Policastro, V., Righelli, D., Carissimo, A., & Cutillo, L. (2021).",
    "A new consensus-based method for biomarker discovery from networks.",
    "BMC Bioinformatics, 22, 1-18.",
    "doi:10.1186/s12859-021-04441-8"
  )
)