Parameter bifurcation plots — sracipePlotParamBifur • sRACIPE
Description: Plot the expression of the genes against parameter values to understand the effect of parameters on the gene expressions.

# Parameter bifurcation plots

Source: `R/AllGenerics.R`, `R/methods.R`
`sracipePlotParamBifur.Rd`

Plot the expression of the genes against parameter values to understand the effect of parameters on the gene expressions.

    sracipePlotParamBifur(
      .object,
      paramName,
      data = NULL,
      paramValue = NULL,
      assignedClusters = NULL,
      plotToFile = FALSE
    )

    # S4 method for RacipeSE
    sracipePlotParamBifur(
      .object,
      paramName,
      data = NULL,
      paramValue = NULL,
      assignedClusters = NULL,
      plotToFile = FALSE
    )

## Arguments

.object | RacipeSE object generated by `sracipeSimulate` function.
paramName | character. The name of the parameter to be plotted.
data | (optional) dataframe. Default rSet geneExpression. The data to be plotted. For example, use rSet$stochasticSimulations$[noise] to plot the stochastic data.
paramValue | (optional) Dataframe. The parameter values if rSet$params is not to be used.
assignedClusters | (optional) Dataframe. The cluster assignment of data.
plotToFile | (optional) logical. Default `FALSE`. Whether to save plots to a file.

## Value

none

## Examples

    data("demoCircuit")
    if (FALSE) {
    rSet <- sRACIPE::sracipeSimulate(circuit = demoCircuit, numModels = 100,
    plots=FALSE, plotToFile = FALSE)
    rSet <- sRACIPE::sracipeNormalize(rSet)
    sracipePlotParamBifur(rSet, "G_A")
    }