default:
  host: "0.0.0.0"
  port: 8000
  open_in_browser: FALSE
  quiet: TRUE
  preloaded_dir: NULL
  static_root: !expr system.file('www/phantasus.js', package = 'phantasus')
  cache_root: !expr tempdir()
  cache_folders:
    geo_path: !expr file.path(tempdir(), 'geo/')
    rnaseq_counts: !expr file.path(tempdir(), 'counts/')
    annot_db: !expr system.file("testdata/annotationdb/", package = "phantasus")
    fgsea_pathways: !expr file.path(tempdir(), 'fgsea/')
  geo_mirrors: "https://alserglab.wustl.edu/files/phantasus"

test_real_geo:
  cache_root: !expr tempdir()
  cache_folders:
    geo_path: !expr tempdir()
    rnaseq_counts: !expr tempdir()
    annot_db: !expr system.file("testdata/annotationdb/", package = "phantasus")
    fgsea_pathways: !expr tempdir()
  geo_mirrors: "https://ftp.ncbi.nlm.nih.gov"

test_js:
    host: "0.0.0.0"
    port: 8000
    open_in_browser: FALSE
    cache_root: "jasmine/cache"
    preloaded_dir: "jasmine/cache"
    cache_folders:
        geo_path: !expr cache_root
        rnaseq_counts: !expr cache_root
        annot_db: !expr cache_root
        fgsea_pathways: !expr cache_root
    geo_mirrors: "https://ftp.ncbi.nlm.nih.gov"
