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\newblock Global modeling of transcriptional responses in interaction networks.
\newblock {\em Bioinformatics} 26(21):2713-20
\newblock Preprint available at: http://www.cis.hut.fi/lmlahti/publications/Lahti10bioinf-preprint.pdf

\bibitem{Lahti10thesis}
Leo Lahti (2010).                                     
\newblock Probabilistic analysis of the human transcriptome with side
information.                       
\newblock PhD thesis. TKK Dissertations in Information and Computer
Science TKK-ICS-D19. Aalto University School of Science and
Technology, Department of Information and Computer Science, Espoo,
Finland, December 2010
\newblock http://lib.tkk.fi/Diss/2010/isbn9789526033686/        
                    
\bibitem{Honkela08} Antti Honkela {\em et~al.} (2008). \newblock
Agglomerative independent variable group analysis. \newblock {\em
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\newblock In B.~Sch\"olkopf, J.~Platt, and T.~Hoffman, eds., {\em Advances
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\bibitem{Parkkinen10bmcsysbio}
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\newblock Searching for functional gene modules with interaction component models.
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