049a6971c78ad9be9227e30dc59b233f *DESCRIPTION
71db2b876090a2f1fa02c009677f9938 *LICENSE
5e6633d6cb9e27972d0b1588cf76557e *NAMESPACE
b07c753ccb05063e18137490b0adf96c *NEWS.md
de53a3331e90b96ce379e83a6f06518c *R/RcppExports.R
f11c9793028109c31be9e26c1fb4363a *R/calculateFitnessScore.R
d8eafb05c443944d8b85922bb5a2ea35 *R/calculateRelativeFC.R
9fc231bfbe752ffc9697b7cfd7f596ed *R/collapseMutantsByAA.R
432ddedad438955dc2538f48d8f2eaae *R/digestFastqs.R
1aef6b67e8d3760768d28f78540eecf0 *R/generateQCReport.R
98d212336c1beed18f6caff12f709033 *R/linkMultipleVariants.R
9b07ac423b86fb36070a978b2df92f4a *R/mutscan-package.R
eae6321160be1b311f5c6b953d8b3618 *R/plotDistributions.R
2bd0a7e3f224fd9bf1a32b8678467aa9 *R/plotFiltering.R
64fda18eddde22ae36f18e31f1191156 *R/plotPairs.R
d56eeb00cfcb5c4ed3d7a9ae49269024 *R/plotResults.R
5df4adb0ef1e428136687366ece60378 *R/plotTotals.R
4484ac35e4d9852f9448e1e2c4d1e018 *R/relabelMutPositions.R
652bc0ecbaf9e04712ec1c286182e9a2 *R/summarizeExperiment.R
32390bf78167bbc87daeb4305aeecb71 *R/utils.R
3aaa6a0fe043973ddfb538d1a07c3d4e *R/zzz.R
2cc82be26b159fb044a4b42454e5ef35 *README.md
4bbde0c1c5fe4128e9b678270e44444f *build/vignette.rds
8d70aefa53faebfa8c81b4ceddd3e55a *inst/CITATION
e7917ccb0c753912529f56c457ac64f9 *inst/doc/mutscan.R
b1a6d10cd3d09d8d8b628d6f6a2998d2 *inst/doc/mutscan.Rmd
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07881876303dec930d22326164e69ce9 *inst/extdata/GSE102901_cis_se.rds
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181f0508fc83ec1474eaf1c35c2dea83 *inst/extdata/transOutput_2.fastq.gz
bf489276fd8927040ec37c24804a027b *inst/scripts/generateExampleData.R
6283e0f89887fd5f18d911ff8a817d91 *inst/scripts/generateExampleDataForLinkMultipleVariants.R
13b03b142579539cc51857ed03a13603 *inst/scripts/generateValuesForUnitTestsCis.R
f37a89e585af538a22ad6c1c8625426c *inst/scripts/generateValuesForUnitTestsLeuJun.R
56dcf27a1ab2b32a56c2b07e567ff15b *inst/scripts/generateValuesForUnitTestsTrans.R
d316a48fa5877c784ec14fd5c6a78c9c *inst/templates/qc_report_template.Rmd
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9a0825153c21b4927716f29834dbb8de *man/plotPairs.Rd
dc269b0bf5363ae42bde7a4bdf5dd4ec *man/plotTotals.Rd
1c9b78fafc1c03a4dda3a72778543e14 *man/plotVolcano.Rd
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8ced2ac62602676ff5281e2a2907c8be *man/summarizeExperiment.Rd
72d9f382752f74e301fbc33868fa7aab *src/BKtree_utils.h
180f550c92e1e6cf9f307a5bab559658 *src/FastqBuffer_utils.h
3f0cec6dd2e2355763ed6371a7d34968 *src/Makevars
602a6bb65adef973096b091602ececd9 *src/Makevars.win
f67c48d4126a0fed76bb151bd8da1195 *src/RcppExports.cpp
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bed4a3eb9e9af832e1595b8c99f2c925 *src/digestFastqs.cpp
537c518bd47d59f6b878ce1930fc29e6 *src/mergeEntriesForSummarization.cpp
7836646a46758e3561218de3bea1e922 *src/stringdist.cpp
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82ebaa3a6a633ad58b9157ac3e819e4d *tests/testthat/tests-utils.R
efb9521083554fae4b624b0b5e6c24e7 *vignettes/mutscan-overview.001.png
b1a6d10cd3d09d8d8b628d6f6a2998d2 *vignettes/mutscan.Rmd
