d210b8256c958588173c8b4c1e53e193 *DESCRIPTION
b745a27ee29d2466c8abf4e51d6579dd *NAMESPACE
1057c4690984132d19ca9ec3581ac0be *NEWS
f00c15c793e51e0a3e4352cdca58cfe4 *R/AllGenerics.R
b0e889c40a021a57a3fdfd329c40c465 *R/IlluminaID2nuID.R
6864531a8c1eff6b103e8490409abacc *R/LumiBatch-class.R
fac985c8b7003a1fe687598e9c6ab0ca *R/addControlData2lumi.R
74a3d61b303d5ab21ccac8e98551e3f5 *R/addNuID2lumi.R
55c9069e70aa6853a22fcf186515e723 *R/bgAdjust.R
3f5c279c2f354bfbb5873216a6f88201 *R/detectOutlier.R
5dab5d6a42e3723b65e750ba5b407c94 *R/detectionCall.R
af4a1643d0b776364b8498d4585751a0 *R/estimateLumiCV.R
eeca3a9bc2c75688237b0b2ef0321ae7 *R/getChipInfo.R
3d1b7396fc7303988dcc60eaaea48e2b *R/getControlData.R
7bcfe17b293894f9be8c7b5b22f852b1 *R/getControlProbe.R
2676398d3af3eeaae74b4e2fe6789ba6 *R/getControlType.R
80c6c5b0aaf3d9fa2d19805c6699ce61 *R/getNuIDMappingInfo.R
70b03e2bef66def672171069064ca4dd *R/id2seq.R
69193307c32ce2197dbb647fc473cddc *R/inverseVST.R
460901763960c1e11e0c26391582a1be *R/is.nuID.R
870ab90b7bd86e317be5c856c334d98a *R/lumiB.R
ac25fc4c7990c11fb698ffb34d563d6e *R/lumiExpresso.R
259fac7153353c573398c6e026b879ae *R/lumiN.R
efe7f90cf066bd54d680cad0b6c515ff *R/lumiQ.R
ce1694dd2259491066e137d15739e6a1 *R/lumiR.R
1fccf3e5985dfccb39f38413b827ef04 *R/lumiR.batch.R
ba2aaa5f45a9480db1c89e59c7829692 *R/lumiT.R
5e64a1f76c0e7c88162b9f3fae469423 *R/methylation_preprocessing.R
d83a7e1e13ec574c855b88ba03340735 *R/monoSmu.R
d2ab16d991f50a206269661a8d59fd1c *R/monoSpline.R
13baf505411f08d3226a0929f816988b *R/nuID2EntrezID.R
2426a385f9929f5be05ccebda65dfc37 *R/nuID2IlluminaID.R
57cd3d282aca78efe6a6518919f33ac8 *R/nuID2RefSeqID.R
a6e5e1671656fedb22fc2572d8c241a2 *R/nuIDMapping.R
d14087e25c9fea075a2e20af6869ec9c *R/plotCDF.R
95e72f27e240ef2a7ee7feba12cbc4d0 *R/plotControlData.R
eb2e84029e067d9583d1db84b618df31 *R/plotHousekeepingGene.R
af0505be15a24f366568196a87a117e6 *R/plotSampleRelation.R
90b1983af8540238685bd32716540505 *R/plotStringencyGene.R
95110388788f4f14a0575c5182f50c1b *R/plotVST.R
e9d612917d88853366d9d6747c18a029 *R/produceGEOPlatformFile.R
e0e199511dd54b1aa14b1f0586e2addf *R/produceGEOSampleInfoTemplate.R
0b2c748b3b6aa70f828ff520e942123c *R/produceGEOSubmissionFile.R
a85f3637b052366288144fbaefc5c21e *R/produceMethylationGEOSubmissionFile.R
13fca68bbc526d30816e0c460a7228f5 *R/rankinvariant.R
52adfaa2d1dd6fb507eb59bd4e1fe880 *R/rsn.R
8a94763f8657edfdc1bb8e3642e088f6 *R/seq2id.R
79c408b48d5cd24098944fa89e472eb2 *R/ssn.R
2e520fee1f675aed957eaa4d085ccdbc *R/vst.R
6125971d7e628ca226cdc2d07107d2f6 *R/zzz.R
f067e09e8e7eb081131da867f337fcea *data/datalist
268d742e365f2744a780322790b37bb2 *data/example.lumi.rda
fdf2e7abeefe7cf738d2bdc5eb898879 *data/example.lumiMethy.rda
4fcae23120705a3c0304fe27c4d4a40c *data/example.methyTitration.rda
49818090c785f4e9f1c4cb769d1d48c1 *inst/CITATION
4ac58d64713cf5f1a2d95f67b12c5dfd *man/IlluminaID2nuID.Rd
081bd9d89b101a62a2f8050aeea061ac *man/LumiBatch-class.Rd
691cf688bdd64d9d9c97293640c61962 *man/MAplot-methods.Rd
edccd60f42c8ed001846a9965f256a11 *man/addAnnotationInfo.Rd
2f82af93b0dbdf2a9c1f8757e8ba4a74 *man/addControlData2lumi.Rd
93532d2329c74fc9b5a6b3ed3b68050f *man/addControlData2methyLumiM.Rd
94682b8167c2cff8c00a5c88c7027601 *man/addNuID2lumi.Rd
dc343a07a1fd547445744e4bb8b17b2d *man/adjColorBias.quantile.Rd
5dee8e7378b70d33a9f54dab226a6934 *man/adjColorBias.ssn.Rd
d14c297c8b634e0a4863775e94b1a5d7 *man/asBigMatrix-methods.Rd
3ba102e0ac8c48755b9d06c4b4793896 *man/beta2m.Rd
52ab81504180c7178d8ce6241410e9e6 *man/bgAdjust.Rd
6684f8754ce0f6e2e214d408c5080396 *man/bgAdjustMethylation.Rd
825b452810856a3a9e79abf7210448fd *man/boxplot-MethyLumiM-methods.Rd
e8355e4fb2a64604e87a5a5969148953 *man/boxplot-methods.Rd
da7017f454469616d063e84ed7ba68fd *man/boxplotColorBias.Rd
c656891b1995f0c5cb9234c9eb5917e1 *man/colorBiasSummary.Rd
1a264bfadbc08b50ad5b218ffb308e8c *man/density-methods.Rd
516378c5dfc8d032a5f8662e675739a8 *man/detectOutlier.Rd
f0b5d6b2973b8c5c4b2224678ca309ff *man/detectionCall.Rd
b7bcaa80ea3b440fe28c46c85a1df8c9 *man/estimateBeta.Rd
90726cfcf80ea3d9dd9ebc4424d2145d *man/estimateIntensity.Rd
bc66704cd2207fe4eec919eebd315698 *man/estimateLumiCV.Rd
49a23fa00f07e029ba5670bd23720b8f *man/estimateM.Rd
d88b5029754a7582c23cf90642088d6a *man/estimateMethylationBG.Rd
ac592e4d34c6ce55c31a93c7ecca06df *man/example.lumi.Rd
089f78ffc9cc9b9022a218ffcfed41d1 *man/example.lumiMethy.Rd
f9e41a999aee95b5514d7946efd7eaed *man/example.methyTitration.Rd
01217d1101c96ca14f84d436ba8689be *man/gammaFitEM.Rd
8d123dd8ddb8556cb6bc593494c30a61 *man/getChipInfo.Rd
6e4894d629c1298d6a45ab1fe03cd82b *man/getChrInfo.Rd
dfe137e870d43f2f9aeb575d8ea08508 *man/getControlData.Rd
69e63c3f76928d46483ba9512177d288 *man/getControlProbe.Rd
b821e7edd018f1f43f0c03020283c990 *man/getControlType.Rd
16cc7bf98bd7bc4e6ce8a529c0717111 *man/getNuIDMappingInfo.Rd
93aca0900122985bd62ec00477dd0461 *man/hist-methods.Rd
9ea7dd695f51bb3f9304d848b81bae99 *man/id2seq.Rd
c29cb943420ef8768819c425e25f1e73 *man/importMethyIDAT.Rd
5bd9d99042cf8d45fc26c93098cac58e *man/inverseVST.Rd
3cf1b9837ae53c2b5e4d16fbccc438b9 *man/is.nuID.Rd
2a99df47dc2bab9438afd7e9cb0f3875 *man/lumi.package.Rd
b2eaa764f183039f4d339dd3eea911eb *man/lumiB.Rd
a5d9552c867a98c9decb0e3bd5a880e5 *man/lumiExpresso.Rd
b95aa32adce0de26a6833d955f3c74a1 *man/lumiMethyB.Rd
a2fcba3731853f12d493efe2d5c4552d *man/lumiMethyC.Rd
bcdfdfd0f4c61d55aa30342fde5a5355 *man/lumiMethyN.Rd
4daab32c3ac829e2f1e379f352000079 *man/lumiMethyR.Rd
e1444d6aa985cb1a8c3e72ce9979db66 *man/lumiMethyStatus.Rd
18382661cae5e0ba265ee4266c9c25a9 *man/lumiN.Rd
87f9250d796ca2f6df13629542e6adc8 *man/lumiQ.Rd
0d27d9d6a449e931f3eabb4c2576fc24 *man/lumiR.Rd
867a88ce6aa0153fce363079425d8c43 *man/lumiR.batch.Rd
3a7ff8aae0b15458d4cf887f106cfa80 *man/lumiT.Rd
b80ce2fd31e3f0f4cf36babd0961b8c4 *man/m2beta.Rd
cb34c3c751c66bfc2a1ab81c5dadc69f *man/methylationCall.Rd
5d190ca31a220535305fd3da6ca976b7 *man/monoSmu.Rd
788067beed04bc07746c4a3c616c3d5b *man/monoSpline.Rd
baf8cc9052730c14f0ee08492f6eb7bb *man/normalizeMethylation.quantile.Rd
7a755091f471df09caf44e6fdbb82349 *man/normalizeMethylation.ssn.Rd
7c5bdbf6a18f7460f9b0345b3210665f *man/nuID2EntrezID.Rd
d2a6069e4fb75c5e6b251b57d3bb5a5c *man/nuID2IlluminaID.Rd
a7f7ba33cd9a788b1edc8eeb0ce4c36e *man/nuID2RefSeqID.Rd
1f8ccbe99e58118d2c487a908705bef3 *man/nuID2probeID.Rd
a6f2ed8b91a42726b33810200e20aa13 *man/nuID2targetID.Rd
f3a07f4b84e559c668b8b7cc42df2d4c *man/pairs-methods.Rd
8d0c1eaac5589817928da6f7c8474bae *man/plot-methods.Rd
643e39eeffc3a2373a2d2a4729a2da2c *man/plotCDF.Rd
ea5712ff8030dd3fdc97193f6c3047f2 *man/plotColorBias1D.Rd
935d499291b6c3d4323ac1b4f4914f6e *man/plotColorBias2D.Rd
1e8f99342ef40ef925c2bff93352f236 *man/plotControlData.Rd
ee328632b24a25f52859d8e13002545d *man/plotDensity.Rd
47a39fdcc18c97b8d4ca854e888c0c7d *man/plotGammaFit.Rd
c18680095fe2fdc238aef39c2702d6d6 *man/plotHousekeepingGene.Rd
4590ee59d9532f46f8d0c94b4d7716aa *man/plotSampleRelation.Rd
2238c599a188e07142840a114b0b63dc *man/plotStringencyGene.Rd
9e62ff0ed4331af5c02f451c1b952f45 *man/plotVST.Rd
5bb02b33e1f101b5148e7867a402d8a0 *man/probeID2nuID.Rd
c2104d84314f176ec297dd5f7f485218 *man/produceGEOPlatformFile.Rd
c869519db954dfc4af88375d8700d3ad *man/produceGEOSampleInfoTemplate.Rd
4164f5fa0bf4a8ca95f5a9681f6bafb7 *man/produceGEOSubmissionFile.Rd
bc365d71e8809bdd18d4df01a1938e05 *man/produceMethylationGEOSubmissionFile.Rd
9608d6fe30a52d204466a57a83cccc42 *man/rankinvariant.Rd
3873dc8b103741924a759e8cb35964f4 *man/rsn.Rd
a3e04ac2cd0e1da7dd3dbe6bc385f076 *man/seq2id.Rd
ecd3ace8959e44645750e6b8fcbf6103 *man/smoothQuantileNormalization.Rd
7b38cbdcefce3aea2cfeed0f7651f066 *man/ssn.Rd
90386a17c36f32d15cfd3db07bf36bfd *man/targetID2nuID.Rd
78476a2c5618a75eda1031775f964f1c *man/vst.Rd
b2225fe3c46f996fe9981eb44d868301 *vignettes/IlluminaAnnotation.R
0d5be49e1fe23451e1c87f9b74b6dee9 *vignettes/IlluminaAnnotation.pdf
d4bb05eb441805d32968e3b41f83e1c3 *vignettes/lumi.R
48af1c9b01d36ecaece80466d674d650 *vignettes/lumi.pdf
6e36a26f2fd880960cc0e0c869b29aa2 *vignettes/lumi_VST_evaluation.R
c953c7f567b18bf3a70603f1b94b98f9 *vignettes/lumi_VST_evaluation.pdf
b0157d83f8e860e2b764db73969f61e3 *vignettes/methylationAnalysis.R
536dc88933dcf34729ed6365a7cfc52f *vignettes/methylationAnalysis.pdf
