991fbab31d539abfd11dfddc45e670a8 *DESCRIPTION
e838c75cbc64806d22a72255ea386cca *NAMESPACE
df945e42bbb39d5fc2dc5bbee553f1c4 *R/contingency.table.R
79a09281f5393966098e57a094047a66 *R/glm_test.R
6f8009ab8505e6fb8305b0e2787a26af *R/ibs.stats.R
201500492c594ff9d3cef7c03f842965 *R/indata.R
7f04c1c2d4a2ed08842de5efd7607341 *R/ld.snp.R
9d926c0659dfd782f4b67e059bb9078b *R/ld.with.R
efe3f21aea4975ca6d8ce5d7264d5e8f *R/ld.with.R.eml.R
377e6749646b0986e2b3a8eee93418b5 *R/misc.R
3dc3c4a73710dcc9deb3cd5e7a65a3f5 *R/outdata.R
39abddd71d2ec2ccc234a2223d103fdb *R/qq_chisq.R
be9479f1c386dcf71f5c15e4e1282400 *R/read.HapMap.R
25c36ca52da96a4aed98cf86d92622b9 *R/read.chiamo.R
36cb17e36cc3bdf5c30525546968b12e *R/read.snps.pedfile.R
381ad475b1bb2fc5fdf1dbefa102ab35 *R/single.R
b21b57ea89387c051c24cf46110a6dc1 *R/ss.R
14ce32b6af7c4050810f05387a146fbb *R/structure.R
e927a6c2b43b1775b1c302141a45756e *R/wtccc.sample.list.R
abaaa7144b0a18ac360b4427ff464817 *R/wtccc.signals.R
6efc4f9b3e386c37584152532981fc0c *R/xstuff.R
98ffc83233d78a87bd326a79b3191208 *R/zzz.R
c94241a5758386d07725f297e1f29c6f *build/vignette.rds
915f2551e74abe0ce2bc43c4f696962b *data/datalist
048309e92941c0124cdcf9aa2e9dc06a *data/for.exercise.RData
644cfc10a8bbd52464577c16147c017b *data/testdata.RData
8b729c8b0d5acad174de3010504b5b03 *inst/doc/chopsticks-vignette.R
1e890dd46aa8f435aacc4beae3207082 *inst/doc/chopsticks-vignette.Rnw
e5a6e897f3b341b2cbbabefec6896a48 *inst/doc/chopsticks-vignette.pdf
94058cd24441a04850838ac5bc9b0bf7 *man/X.snp-class.Rd
2311cef2ae4e2c2457ed86c1b5dae42a *man/X.snp.matrix-class.Rd
37371ca8b0acb4d162927649c4859910 *man/epsout.ld.snp.Rd
b0d6c463e60c3167c39e6a0e4b9a3d14 *man/for.exercise.Rd
9354590cc54e6bafbe4e58ff43b1d688 *man/glm.test.control.Rd
5afabc2a94b8be4aad92da35f578fe32 *man/ibs.stats.Rd
db8762b122cdbeb0242651894c2ef01d *man/ibsCount.Rd
7c32bdf157dd606960f43040e667cd54 *man/ibsDist.Rd
c2d47b5460a58b01dea49e8f30be47ff *man/ld.snp.Rd
f819e4011725ec247b6e454ac175142f *man/ld.with.Rd
eebbc702a41578759c5eefce26787ffd *man/pair.result.ld.snp.Rd
87a780bb00b7ffa3d92e7a4d230b8b50 *man/plot.snp.dprime.Rd
a9d312e7164449c66173ebc61ade6aeb *man/qq.chisq.Rd
110c5e00b5c5c084a283ed8da39d92df *man/read.HapMap.data.Rd
8b8eaa844c9d86c632233198a4595619 *man/read.pedfile.info.Rd
20951e1acede4d662db03e57cace04f8 *man/read.pedfile.map.Rd
72233d22e2a7db86d3c496199af6d872 *man/read.snps.chiamo.Rd
61155ea6f8ae85710270ae7781db4f79 *man/read.snps.long.Rd
181f4bd539d9003c0326dfe151fddded *man/read.snps.long.old.Rd
e4725e55449dec211053fcf74cf2673a *man/read.snps.pedfile.Rd
abb0f010330039a2dd0f165fa55cddcb *man/read.wtccc.signals.Rd
95072fdef08ad07fb417cddd62dd3d77 *man/row.summary.Rd
42c39d304b587ad60ee9e4c9100c30fd *man/single.snp.tests.Rd
aebaeffc6155c906413bf4b8be27b45e *man/snp-class.Rd
8e8a0c5033e691752e1a4863f8679027 *man/snp.cbind.Rd
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8c59fb86c1fb30b010e30647472c6256 *man/snp.dprime-class.Rd
84b4ef1053085430a23de93bacd9da6a *man/snp.lhs.tests.Rd
94dc84b85d1fdb003cc562afd6171525 *man/snp.matrix-class.Rd
88133b088127ce64409352d10d373639 *man/snp.pre.Rd
5d707d284584c77c56b2f87f87492c63 *man/snp.rhs.tests.Rd
032226ba9a6ae666a19fa47901fb4ce1 *man/snpMatrix-internal.Rd
12e8410e99fc927e735660d83f0cf083 *man/snpMatrix-package.Rd
58820169bfc74e21333fcf60cf83be9e *man/testdata.Rd
9c67893ab8e53f5d4fb10ddadadf8d90 *man/write.snp.matrix.Rd
7f6a71436af8e57b952c749f65f10591 *man/wtccc.sample.list.Rd
86b6abc9183b111571f4d2ff88cc77eb *man/xxt.Rd
88ef37789adc0b726773f167c91ea86d *src/Rmissing.h
292ddbf2512f6afd83d44e545996744d *src/adler32.c
161b87a90ad24dbcb9eb40e4c0459d40 *src/bind.c
5e8131191955d1c10d7188a286454808 *src/compress.c
6a982093318d2352b3266c686b0d5319 *src/crc32.c
4d1cfa258e52f3f91b09afdba248fec5 *src/crc32.h
4cb0efc3a716177cadc6ee53be926b5f *src/deflate.c
114f09863cfdd5639c767b872b421859 *src/deflate.h
ba6fea04fd6b101332486916901c2e1d *src/force_hom.c
49cc56c490b96b646cbb70bc0a71b920 *src/glm_test.c
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dc758319e94d338458490411109c87a6 *src/glm_test_R.c
63eb47f389a35fbaacd6a052dfd7fe0c *src/gzio.c
c320c42a73189b8b2369f4a2177c1a6c *src/hash_index.c
8119f04fb3447dd0c4fd7d0885270dba *src/hash_index.h
662fad5a2f9de9f5576234e1901d16c3 *src/ibs.c
d11eeb3cba63fc5725cd92e3ca54a24e *src/in.c
79484c049a6c2a110eff24b5235dd4a3 *src/infback.c
962b35b2eed3bf72d26eedd0f68e16a3 *src/inffast.c
6829902d95364faa2e740e7359a50c30 *src/inffast.h
28aabce27feb2810caf634a39abb9d8b *src/inffixed.h
9132e0c3c8f19d887904d8ba81446a33 *src/inflate.c
33ea38bfbc068b14f1931aff7cce56ac *src/inflate.h
a6a36b368661bdabf81b1fe66f3e1831 *src/inftrees.c
438e654ab8fe4725813cfa33107c2863 *src/inftrees.h
b1c4127c0407273d623d6e22bc1efcfd *src/input.c
9252623ff7eef10a0e671c547d1dc8df *src/inputNew.c
d6c7119e0b8bbe37211e1979987f9052 *src/input_unsorted.c
02624c22abc3fac9b294269dc9dcffa4 *src/ld_graphic_eps.c
5e53ab46482f8cbd2c9df6866afbb9fb *src/ld_graphic_eps.h
ccc8fa04a6e95604148f6deafa33ee9f *src/ld_graphic_eps_priv.h
37b5b2fbeaf1d33e0e542a2f8942ce0b *src/ld_with.c
1da3aa5546adebe4c7cd86ad2f0f1ca5 *src/mla.c
9724d6b229ed279049583a143f3d8726 *src/mla.h
96e4cec9d7363b56132661381365dc58 *src/outdata.c
a15ee159418bd105b4fd16b7d6688295 *src/pairwise_linkage.c
21c7c122d63da89c52d683e8af326b5c *src/pairwise_linkage.h
6cc32e0c52f3d69ce14c4f6b708fc356 *src/read_chiamo.c
2c6c97812f23bef3ae9d3a48d846b774 *src/read_hapmap.c
cef7f5fd0c1d298b711fd233d516e819 *src/read_pedfile.c
1f35b0a616c17ab600ff1bb21dbf0890 *src/read_pedfile_priv.h
e8aa8e181013fd628062e8e3caa2fbf4 *src/read_signals.c
17eb89620e35d749c54da8669ebf73a7 *src/read_tokens.h
1fd77df5a4e22cf8d32330d22b4a2de7 *src/readped.c
12af9f39219e7db328cfd15a0169f18d *src/sdfpw.c
8000c7e2af2b8d00eeb753ee8fd58749 *src/sdfpw.h
22c249bb038f3ec6bc45ca991ee4154f *src/single_snp_tests.c
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e3850a736cea1df2adaa2c9bd25822a8 *src/snpmpy.c
b5a4494020e6bb69cc0100456e0dea5f *src/solve_cubic.c
196beb6df04cfb4eafb2d81048947de7 *src/solve_poly.h
ac8751132157a6ede62a624aea553534 *src/solve_quadratic.c
e9c8b065e3501445348cd896c20b9d66 *src/structure.c
366d95cccc04dd1ff5b9e02914fa3029 *src/trees.c
9c26c55c8a5b7121850f83947a523c04 *src/trees.h
8b61cfc5beab08870acd452fffc5d126 *src/uncompr.c
a14119da1f27de33b619ee111b1e1fa4 *src/zconf.h
9c4b84aff68aa55f2e9bf70481b94333 *src/zlib.h
7429e261de0662dde8f41d96f16827e9 *src/zutil.c
f7b793ffd846b43b2f293e20c17a4793 *src/zutil.h
ccc9b235ca29b34bd3c0035a866793a1 *vignettes/CompatibilityMode.pdf
1e890dd46aa8f435aacc4beae3207082 *vignettes/chopsticks-vignette.Rnw
e5dff6607cc00b5ce73ec08cb2320bd8 *vignettes/index.html
b5bdbce05bdbfe8be4a7ce95b9e6b9a1 *vignettes/practical3_snpStatsBug-diff.pdf
19719804f286c3480a894732b4e33422 *vignettes/practical6_snpStatsBug-diff.pdf
659247c8c1ee6bac9b4c526a7ea45e9f *vignettes/practical7_snpStatsBug-diff.pdf
336a92b3c526b7f6e4a31b87f9550135 *vignettes/snpMatrix-4d.pdf
b171f26561ecbf79001e279423fecccb *vignettes/snpMatrix-paper-HumanHeridity2007.pdf
861379e27fafd1e1e9b41522e3d30ff9 *vignettes/snpStatsBug-vignette.pdf
c95aee5814b2f664a78818795b0369cd *vignettes/snpStatsBug_1.3.6_-vignette.pdf
a59b356bdd4d80d113da5839f759b5bc *vignettes/snpStatsBug_1.5.4_-vignette.pdf
