Package: annmap
Type: Package
Title: Genome annotation and visualisation package pertaining to
        Affymetrix arrays and NGS analysis.
Description: annmap provides annotation mappings for Affymetrix exon
        arrays and coordinate based queries to support deep sequencing
        data analysis. Database access is hidden behind the API which
        provides a set of functions such as genesInRange(),
        geneToExon(), exonDetails(), etc. Functions to plot gene
        architecture and BAM file data are also provided. Underlying
        data are from Ensembl.
        The annmap database can be downloaded from: 
        https://figshare.manchester.ac.uk/account/articles/16685071
Version: 1.52.0
Date: 2011-09-14
Author: Tim Yates <Tim.Yates@cruk.manchester.ac.uk>
Maintainer: Chris Wirth <Christopher.Wirth@cruk.manchester.ac.uk>
Depends: R (>= 2.15.0), methods, GenomicRanges
Imports: DBI, RMySQL (>= 0.6-0), digest, Biobase, grid, lattice,
        Rsamtools, genefilter, IRanges, BiocGenerics
Suggests: RUnit, rjson, Gviz
License: GPL-2
URL: https://github.com/cruk-mi/annmap
Collate: zzz.R db.R utils.R cache.R statements.R filtering.R utr.R
        coords.R ws.R plot.genomic.R plot.ngs.R si.R
biocViews: Annotation, Microarray, OneChannel, ReportWriting,
        Transcription, Visualization
git_url: https://git.bioconductor.org/packages/annmap
git_branch: RELEASE_3_22
git_last_commit: 2222171
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 02:30:06 UTC; biocbuild
