2b39dcf0318c5b8749912db0ad5d9d54 *DESCRIPTION
e3fc50a88d0a364313df4b21ef20c29e *LICENSE
6bf0f7be9be212855091a0de6ab6c01a *NAMESPACE
9b71a5001fe5ad5f7aa9e019c84ad6c8 *R/data.R
e99ed7f0187486478df5fd72c57c1c91 *R/data.import.R
430c209786607cb46e494955b7d9530e *R/deprecated.data.import.R
31dba52f20ce26ec63e61c52cced975c *R/deprecated.mutation.factor.R
871363375e513cbf51f24a77cb2b047d *R/deprecated.utils.R
f1d4501b1ca3c9a6efffe43b1a002dc6 *R/signatures.assignment.lasso.R
3502453bc7707491136f3f9972f51ce6 *R/signatures.discovery.lasso.R
85a3adb7fc43b6013a135893740c6c77 *R/visualization.R
c87cf9d3bce573a0ccf47d7079e0c1be *build/vignette.rds
1754403b81bd567ff48b36e15fb4a097 *data/background.rda
377d94abcbea32bf792beac6d6c60487 *data/background2.rda
46c4da0f9fd71f43b79fa6c19f01acf3 *data/cv_example.rda
1fb40335732195a4c77869d0ffd38398 *data/imported_data.rda
f0a2b42a2792708ad9bf323bc6f19793 *data/lambda_range_example.rda
960b553c974e58780e03a76fd4d99620 *data/mutation_categories.rda
6a4c4417fa513653130db7c694f03806 *data/nmf_LassoK_example.rda
d6fc8d907a2ae8694f36a7aa0754ecff *data/patients.rda
541f08d1ffc931d4da67252320200d1d *data/ssm560_reduced.rda
b5aa4d91393346a50b778872b9dd437a *data/starting_betas_example.rda
11dc1db680dd88ac75630b81e842a704 *inst/NEWS.Rd
a5f94e07f7ac266beee1b977acbe55ae *inst/doc/v1_introduction.html
39f951fcfe7de1521abaa56cd9a57310 *inst/doc/v1_introduction.rmd
4a0f5b583a24f0de290f68bd1729d29f *inst/doc/v2_using_the_package.R
221fe6089c34bb4772f33e4b90244378 *inst/doc/v2_using_the_package.html
4aae466abeee82a2f59e310409b3c15b *inst/doc/v2_using_the_package.rmd
d6bf2d6f31c42d62c84b7065c16fdb41 *man/background.Rd
6169bad394329399b3cb98eebf0d251e *man/background2.Rd
e867c7006548f9b53cfb4a5e4f99de23 *man/cv_example.Rd
0bf82caa102fb988b739d736783d34e0 *man/import.trinucleotides.counts.Rd
0487b96c7fdbfadad9a2f6ed7eb3c50c *man/imported_data.Rd
58a8787e7fa5895646ad0a8ebe2c747a *man/lambdaRangeAlphaEvaluation.Rd
8c9f92c3c41260c50995cb063eb9a649 *man/lambdaRangeBetaEvaluation.Rd
ea9b64f0be459afb02074d9abe5d2203 *man/lambda_range_example.Rd
5156d3009cf7072383f775773f33e43b *man/mutation_categories.Rd
6619d0427f1c0844b92787bd3b10c36e *man/nmfLasso.Rd
7cbfdae205d89f2c973f6dec3ad50250 *man/nmfLassoBootstrap.Rd
a01ad7f83d7c918dd7df71b2b1687081 *man/nmfLassoCV.Rd
ca9497e00dfb2d1100cbba4f416e4425 *man/nmf_LassoK_example.Rd
3f272b69c9d9dc7c1e450eba55f9cc49 *man/patients.Rd
1415e9edb25177ac043f76ddfc44418c *man/patients.plot.Rd
291df1ee5f80d614c23790184ffd3651 *man/sigAssignmentCV.Rd
96334007c213a8c880a13fc11cbb58af *man/sigAssignmentEvaluation.Rd
451ad3ec8369bc93f876eac38de3e8ff *man/sigAssignmentLasso.Rd
07749b9be0f006bf50c6921fc20bd973 *man/signatures.plot.Rd
dde3c874bd11297b42aaed3768bdf8e2 *man/ssm560_reduced.Rd
f3e8acdb1d32a8b6fe25d51e81ed7812 *man/startingBetaEstimation.Rd
3b8b8c98cba9a1e0e0cc35615be031e3 *man/starting_betas_example.Rd
2ebb152a0fcb12a973c673ead87381f4 *tests/testthat.R
ebe604c9f7357ac0db5140803e9a4b78 *tests/testthat/test_algorithm.R
39f951fcfe7de1521abaa56cd9a57310 *vignettes/v1_introduction.rmd
4aae466abeee82a2f59e310409b3c15b *vignettes/v2_using_the_package.rmd
