33b66a4ba82dbe4e2896c8ab8aebdc51 *DESCRIPTION
fe06497acaf4f45999925d348c2605f9 *LICENSE.txt
8f127a10177c0b6dddd807ca561ecf82 *NAMESPACE
d2156f1cc5730b02b8bd202cdf65cccc *R/AllClasses.R
45f34d84f7f645dc40c968f9081f0187 *R/AllGenerics.R
9c0d2d19dffe49e6552a12b057615441 *R/classifyNewSamples.R
f8f5ace53be89eda037997ffccf50a2c *R/experiment-accessors.R
7f7bdfde47682ff31668692bdca1aea6 *R/featureSelectionOptions-accessors.R
3d42c6b03131c6bb8b4de82ec2bfb1b9 *R/finalClassifier-accessors.R
b0e8a1dd63460ed1eb7f3c9f922d7560 *R/geneSubsets-accessors.R
c71d2b9c6c8d5f1d0a8b5aa27361cb54 *R/initialize-methods.R
1dff462fb804bb3a351b72669b769152 *R/loadData-methods.R
5abc916431fc388446a5d25aecb24bc5 *R/non_linear_svm.R
10ca5611618d5be57e8dbbbaa7e523f1 *R/one_layer_ext_CV.R
2e64f4e9298e86b245416b24e9fbcda4 *R/rateGenes.R
21206a4b2107cd6387c4ea997d6d88d1 *R/result2LayerCV-accessors.R
d7725de505132fd8e5a4d85a422901f9 *R/resultRepeated1LayerCV-accessors.R
ba69fd324f7f89b3e6b071e86b138672 *R/rfe.R
d0f688ef4a8f936e4fd4b476b7ac2301 *R/runOneLayerExtCV-methods.R
8a63f8bcf7ab8f7ef272c6490fceb405 *R/runTwoLayerExtCV-methods.R
5efeb09112cd7c4d495dfca0bb1cce82 *R/setValidity-methods.R
59df7966b4ba75c1aca326c84769fe68 *R/show-methods.R
31324c1a336a4a3ceff68f6433005475 *R/thresholds-accessors.R
6735c4235cb14d7f19138070bee6b6db *R/tool_case.R
a71365887770984255bb6909c5b2a7d0 *R/two_layer_ext_CV.R
5a44f6440350fa5c4f42112ac2444459 *R/typeValidity.R
b76af87eeb6f9894c7450aac0b37d0ca *R/user_interface.R
f3f9b902e07d1d26ee71e548dbb30826 *build/vignette.rds
d66457c0bca99eeb013ee6ae8383fab5 *data/vV70genesDataset.rda
ab56d8d552bd4cdc72a0e9f17c473aa1 *demo/00Index
07da835c613337e36f6938917db36ffd *demo/demoCV.R
7a0312a359fe5b4ca7b49865c7ba31c0 *demo/demoClassifyNewSample.R
c9ac8510996570fe019a6e96c249c497 *demo/demoPlots.r
770ba6d93573a5ceccdaaa3fb31f7e7c *inst/doc/Magpie_examples.R
3e590e5803bfe4acf4921ebf391e41e9 *inst/doc/Magpie_examples.Rnw
cd053c864c26a334a4ee0b17213deb78 *inst/doc/Magpie_examples.pdf
7470847fcbc220c412ff81df394662f3 *inst/extdata/raw_classes.txt
b015635555dd71abadf307881838465d *inst/extdata/raw_geneExpr.txt
168e9e0da1db9363646caec1b1ce84ca *inst/extdata/vV_newSamples.txt
5937f92b6f15139d1ff967e5ad0ce441 *man/classifyNewSamples-methods.Rd
cefcb40b65af831072e2a7fbe9086650 *man/experiment-class.Rd
3a1d24ef0e85dff217ffec9cb562bfff *man/featureSelectionOptions-class.Rd
c3424cfdc0679584f8c980ac372d418d *man/finalClassifier-class.Rd
458fedf149e2ab8624ce588bc319e1d0 *man/findFinalClassifier-methods.Rd
69ebc650de2abc7bdb17ec5bc3c76c76 *man/geneSubsets-class.Rd
58b39146704b360a2051e99723564018 *man/getDataset-methods.Rd
e99c222feefda0ba3c458da724ce9ea7 *man/getFeatureSelectionOptions-methods.Rd
2c12066ef149447ebb10a93e498aaede *man/getFinalClassifier.Rd
e66f2c9d1a151781e4f7cb4642bceb2b *man/getResults-methods.Rd
76f2ecb61a14e6a8448d27a4eaf89100 *man/initialize-methods.Rd
1e2fc62bcdba8fb96469746acbe3b09a *man/plotErrorsFoldTwoLayerCV-methods.Rd
ad717d32cc35f7965955b0242e8717ae *man/plotErrorsRepeatedOneLayerCV.rd
5bf49a72ca2f716aadaf97c9a9645601 *man/plotErrorsSummaryOneLayerCV-methods.rd
281c52c601dcba39dd2d073f9129c920 *man/rankedGenesImg-methods.Rd
593bc42d61a32d663cbae54e3a420de2 *man/runOneLayerExtCV-methods.Rd
be00362aeeae0155311850654ab87b68 *man/runTwoLayerExtCV-methods.Rd
32f93fefce01c778f16babe1e5ceb8f9 *man/setDataset-methods.Rd
515a2686b4ee465592834edb399ed9dd *man/setFeatureSelectionOptions-methods.Rd
1401dcfc60b1ca25a4cc34105287802c *man/show-methods.Rd
7c42864aa5f64ff210d2979cda9cc2ef *man/thresholds-class.Rd
fa7717bbe31465ef17a83f093829d299 *man/vV70genes.Rd
3e590e5803bfe4acf4921ebf391e41e9 *vignettes/Magpie_examples.Rnw
b18074485e1b9177baa15a504f711930 *vignettes/literature.bib
