/*
 * nvbio
 * Copyright (c) 2011-2014, NVIDIA CORPORATION. All rights reserved.
 * 
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 * modification, are permitted provided that the following conditions are met:
 *    * Redistributions of source code must retain the above copyright
 *      notice, this list of conditions and the following disclaimer.
 *    * Redistributions in binary form must reproduce the above copyright
 *      notice, this list of conditions and the following disclaimer in the
 *      documentation and/or other materials provided with the distribution.
 *    * Neither the name of the NVIDIA CORPORATION nor the
 *      names of its contributors may be used to endorse or promote products
 *      derived from this software without specific prior written permission.
 * 
 * THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
 * ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
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 */

#include <nvBowtie/bowtie2/cuda/aligner_inst.h>
#include <nvBowtie/bowtie2/cuda/aligner_best_approx.h>

namespace nvbio {
namespace bowtie2 {
namespace cuda {

void best_approx_wfa(
          Aligner&                  aligner,
    const Params&                   params,
    const FMIndexDef::type          fmi,
    const FMIndexDef::type          rfmi,
    const UberScoringScheme&        scoring_scheme,
    const io::SequenceDataDevice&   reference_data,
    const io::FMIndexDataDevice&    driver_data,
    io::SequenceDataDevice&         read_data,
    io::HostOutputBatchSE&          cpu_batch,
    Stats&                          stats)
{
    aligner.best_approx<wfa_scoring_tag>(
        params,
        fmi,
        rfmi,
        scoring_scheme,
        reference_data,
        driver_data,
        read_data,
        cpu_batch,
        stats );
}

} // namespace cuda
} // namespace bowtie2
} // namespace nvbio
