Package: RbowtieCuda
Type: Package
Title: An R Wrapper for nvBowtie and nvBWT, a rewritten version of
        Bowtie2 for cuda
Version: 1.2.0
Date: 2025-10-12
Authors@R: 
        c(person(given = "Jacopo", family = "Pantaleoni", role = c("aut"), 
            email = "jpantaleoni@nvidia.com"),
        person(given = "Nuno", family = "Subtil", role = c("aut"), 
            email = "nsubtil@nvidia.com"),
        person(given = "Samuel", family = "Simon-Sanchez", role = c("aut"), 
            email = "samsimon@ucm.es"),
        person(given = "Franck", family = "RICHARD", role = c("aut","cre"), 
            email = "franck.richard@winstars.net"))
Description: This package provides an R wrapper for the popular Bowtie2 sequencing read aligner,
 optimized to run on NVIDIA graphics cards. It includes wrapper functions that enable both genome 
 indexing and alignment to the generated indexes, ensuring high performance and ease of use within the R environment.
License: BSD_3_clause + file LICENSE
Depends: R (>= 4.5.0)
Encoding: UTF-8
Imports: methods
Suggests: knitr, rmarkdown, RUnit, BiocGenerics
SystemRequirements: C++20, GNU make, cmake, CUDA Toolkit(>=10), MSVC,
        libthrust-dev, libcub-dev, gcc, g++
Archs: x64
RoxygenNote: 7.3.2
biocViews: Sequencing, Alignment, Preprocessing, Coverage
VignetteBuilder: knitr
Config/testthat/edition: 3
NeedsCompilation: yes
Author: c(Jacopo Pantaleoni [aut],
  Nuno Subtil  [aut],
  Samuel Simon Sanchez [aut],
  Franck RICHARD [aut, cre],
  role = c("aut", "cre"))
Maintainer: Franck RICHARD <franck.richard@winstars.net>
BugReports: https://github.com/FranckRICHARD01/RbowtieCuda/issues
URL: https://github.com/FranckRICHARD01/RbowtieCuda,
        https://belacqua-labo.ovh/bioinformatic/RbowtieCuda
git_url: https://git.bioconductor.org/packages/RbowtieCuda
git_branch: RELEASE_3_22
git_last_commit: 5051fea
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-30
Packaged: 2025-10-30 06:11:40 UTC; biocbuild
