e82433b7327f1dd738e60e901cd3e735 *DESCRIPTION
78b011bda96dd53c572bd51695d3da5d *NAMESPACE
533de3ad738ec0b41a0366712a8d16ab *R/CNV.R
f6697172924ca85f549d1bff26ec2468 *R/Merge_methylation.R
e1560d2263775298cade9ce3467d7fef *R/RNA_seq.R
43c7ec24b47f70b585580f13d39979f6 *R/SNP.R
9aa44dc0e6378943acbb04e1bc812881 *R/TCGA_id_conversion.R
6c2eccf9471b07a1bb7fa783c4ef9e6a *R/arrayDiff.R
2140a9f998b4640fe75ae798cab2c70a *R/calculate_mean_module.R
e22b6618eb494ae2895386574cf49995 *R/calculate_mean_profile.R
f9d545a5e5984f945730659d3c747310 *R/data.R
9ce6acb98433ba44264cbe9006488bf3 *R/fpkm_count_conversion.r
a100aa1ad7aa3a1ee6e6ded5314105a7 *R/metap.R
41e926f140b79adb5259495057f43c83 *R/prepareChi.r
5adfd01d32768abd967949d4af2aa6d8 *R/rep.R
1cfb7c0b0e9bd2de5eeb3ba0c6687738 *R/sysdata.rda
b894a481453b1dcee00921b0f6117804 *README.md
8c1c244bc39fe3885338f5e0c9f97776 *build/vignette.rds
070dceb636fc0300be4b8976b81f767e *data/GSE66705_sample2.rda
2c3b1a331bbc035f9c9dacbba7409d53 *data/geneExpress.rda
e06307da70e5ba9acf08f891c6a5281e *data/gene_cov.rda
0d27064c8e20b1cc6fd928a98e5812a7 *data/kegg_liver.rda
e7b32221f71207346295f527d6840298 *data/module.rda
5c158ca8f5329118aa349868c27c2207 *data/profile.rda
a2654539d5e3d3141966e92ad9606b4a *data/ventricle.rda
d15ff1810a444e92151bbb686b771ef4 *inst/doc/GeoTcgaData.R
33fc3a74033d50bcd7599be805242e61 *inst/doc/GeoTcgaData.Rmd
c87034f5283c980785f2b0f27dcc0730 *inst/doc/GeoTcgaData.html
8fd7b8a1a94a0c2f19173e3eb2cb5efb *inst/extdata/build_data.R
c1f1064d71b9dd78b25eb2395597f2ba *inst/extdata/cnv/00de3/HONGS_p_TCGAb3_75_76_77_NSP_G.txt
7dd1340c0458e7a9b8f5bbf7ba634fcc *inst/extdata/cnv/00e8/MICHE_p_TCGAb_428_429_NS.txt
506237f91f37d1715dad33222854e9a0 *inst/extdata/cnv/00f9/MINAE_p_TCGA_200_202_203_S.txt
61fd34b66933c1b9f5d6cacf9f4c36d3 *inst/extdata/cnv/0a01/KNELT_p_TCGA_b123_131_S.txt
64330603d35743df897919ae584c5a61 *inst/extdata/methy/0a0b4/jhu-usc.e.H.4.lvl-3.TCGA-13-1405-01A-01D-0460-05.g.txt
4c45f15e7d48280706982a290345ad23 *inst/extdata/methy/0a0b4/logs/file1.parcel
f15727a813fd30e12f12f17cd0f2a9d2 *inst/extdata/methy/0a6b/jhu-usc.e.H.10.lvl-3.TCGA-30-1880-01A-01D-0652-05.g.txt
a196acefabd631541ac92ac53de3fd98 *inst/extdata/methy/0a6b/logs/file2.parcel
c9de45e09425dafb46373b4173a11c28 *inst/extdata/methy/0ae7/jhu-usc.H.8.l.I.TCGA-30-1714-01A-02D-0563-05.g.txt
eee6658420b812f0944e0d344e2dbdff *inst/extdata/methy/0ae7/logs/file3.parcel
066bf478da051d3ecf2f54a7e0dcbd44 *inst/extdata/methy/0b32/jhu-usc.e.H.5.l.TCGA-13-1510-01A-02D-0475-05.gdc_hg38.txt
8176387afc23a4e68e9ca359c9c1f842 *inst/extdata/methy/0b32/logs/file4.parcel
e4d4f801e753f9f2389b6158d7dbda56 *inst/extdata/tcga_cli/at.orl.TCGA-2V-A95S.xml
97789ecd129c813171d83ea155ead64f *inst/extdata/tcga_cli/ati.org.TCGA-2Y-A9GT.xml
cc8997a1c2d85d311f1550e9a5c854ea *inst/extdata/tcga_cli/ats.org.TCGA-2Y-A9GS.xml
7486ee9f29373fbaf99b3b5bbb7a54ac *man/GSE66705_sample2.Rd
1313b25c7a53f61983cce52143e3eb2c *man/Merge_methy_tcga.Rd
2a26aafcc35eeef5414585e8fe22fe4e *man/SNP_QC.Rd
24541ca10016e4fc89d9708e37dcc3a9 *man/array_preprocess.Rd
9ae0f47b2ae4819a3618674ca2d5d485 *man/cal_mean_module.Rd
1b2ef3cbeaaa623c30bc0251fa2e68ba *man/cluster_array.Rd
3e08c1fa278ce00b09e270b7f5bcf778 *man/combine_pvalue.Rd
85744d748a2f5424154ec641173da760 *man/countToFpkm.Rd
d7efc0f3d34e43feb61899a6c36992f9 *man/countToTpm.Rd
94de061a13fdda78d60eb585c93ede5b *man/differential_RNA.Rd
d70183dba46c1eb670b95f3d6ca59a71 *man/differential_SNP.Rd
7b9955c66c0120bf923af4f63e7d3b45 *man/differential_SNP_GEO.Rd
2e2785efb61aa09a1f60a14ad09df247 *man/differential_SNP_tcga.Rd
100f2ffca76f28e896658cadc54d4249 *man/differential_array.Rd
0c512a1ca88b318c55aeb26e1b5a8526 *man/differential_cnv.Rd
7102ebd15eed6180ad1cf85d0c771032 *man/differential_limma.Rd
0b87e51e49ae82f4a644a3da790a51ea *man/differential_methy.Rd
450bd3c2e00fec6e14e700dd587b5811 *man/fpkmToTpm.Rd
e7f5544186300be92cc6f95e860929a7 *man/geneExpress.Rd
f8df7e7a21161038fd2c5b9173615cdb *man/gene_ave.Rd
722983cedeaedeb8ae329153986e2a8b *man/gene_cov.Rd
702269eab382d95d5a9ddd3d5f00d0c3 *man/get_geo_array.Rd
7912d357f20056407acb5b727969908e *man/id_conversion_TCGA.Rd
b297a249a99e4ef99f185b22269c2eb5 *man/kegg_liver.Rd
e1b1c1ce877d16705820029573bf13aa *man/module.Rd
814c59dc40e41856f7a0b4392f028abf *man/prepare_chi.Rd
d1ced8da3ce064ad5994ba4cc7910924 *man/profile.Rd
f684f5d9b9825aeca266e2c19127b3df *man/repAssign.Rd
7d6332725e43e4feebb78194a2b9a08f *man/repRemove.Rd
96ea4db9338cd11d488417691b76556c *man/ventricle.Rd
c91a9c4ab900b4651009c0b8e5e2dbce *tests/testthat.R
5b1bc5eb78e1c4d51f6889b5679cb179 *tests/testthat/fpkmToTpm.R
336b8157952a52e82cc40d73556b6329 *tests/testthat/test_Merge_methy_tcga.R
31f388736d674d56f08a7b3d1cfcbb0c *tests/testthat/test_arrayDiff.R
6699a4c9f5fe8c4a5675c783b9843f6d *tests/testthat/test_cal_mean_module.R
32790e4d77a49955ae82a0f322717a18 *tests/testthat/test_countToFpkm.R
a7b156fd5150746b5c43899e4d2b9e87 *tests/testthat/test_countToTpm.R
c5ae21553d00e27231f40c8961c65266 *tests/testthat/test_diff_RNA_ucsc.R
9d1507d72465c209456cc2d2e576ba20 *tests/testthat/test_differential_CNV.R
67f50cc03fc54d2a42b38401b77a79bf *tests/testthat/test_differential_RNA.R
7c75f0cea5636d16c04712667282fb2b *tests/testthat/test_differential_limma.R
83f25bc29ff54653cb2da4608e589208 *tests/testthat/test_gene_ave.R
a66aa4022820edb7ba8d764bdd8cbebb *tests/testthat/test_prepare_chi.R
8683cad69281204bfab184d6aade2380 *tests/testthat/test_repAssign.R
44f439dead1ac1d85c4b61e5fd000bac *tests/testthat/test_repRemove.R
33fc3a74033d50bcd7599be805242e61 *vignettes/GeoTcgaData.Rmd
