Package: ExpressionAtlas
Version: 2.2.0
Date: 2025/09/01
Title: Download datasets from EMBL-EBI Expression Atlas
Authors@R: 
    c(person(given = "Maria",
           family = "Keays",
           role = c("aut"),
           comment = c(ORCID = "0000-0003-2034-601X")
      ),
        person(given = "Pedro",
           family = "Madrigal",
           role = c("aut"),
           email = "pmadrigal@ebi.ac.uk",
           comment = c(ORCID = "0000-0003-1959-8199")
      ),
        person(given = "Anil",
           family = "Thanki",
           role = c("cre"),
           email = "anilthanki@ebi.ac.uk",
           comment = c(ORCID = "0000-0002-8941-444X")
      )
    )
Description: This package is for searching for datasets in EMBL-EBI Expression
    Atlas, and downloading them into R for further analysis. Each Expression Atlas
    dataset is represented as a SimpleList object with one element per platform.
    Sequencing data is contained in a SummarizedExperiment object, while microarray
    data is contained in an ExpressionSet or MAList object.
biocViews: ExpressionData, ExperimentData, SequencingData,
        MicroarrayData, ArrayExpress
Depends: R (>= 4.2.0), methods, Biobase, SummarizedExperiment, limma,
        S4Vectors, xml2, RCurl, jsonlite, BiocStyle
Imports: utils, XML, httr
Suggests: knitr, testthat, rmarkdown
VignetteBuilder: knitr
Collate: functions.R
License: GPL (>= 3)
LazyLoad: yes
NeedsCompilation: no
git_url: https://git.bioconductor.org/packages/ExpressionAtlas
git_branch: RELEASE_3_22
git_last_commit: 6dde6ba
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
Packaged: 2025-10-30 03:55:14 UTC; biocbuild
Author: Maria Keays [aut] (ORCID: <https://orcid.org/0000-0003-2034-601X>),
  Pedro Madrigal [aut] (ORCID: <https://orcid.org/0000-0003-1959-8199>),
  Anil Thanki [cre] (ORCID: <https://orcid.org/0000-0002-8941-444X>)
Maintainer: Anil Thanki <anilthanki@ebi.ac.uk>
