@Article{stroud_2013,
  Title                    = {Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the \emph{Arabidopsis} Methylome},
  Author                   = {Hume Stroud and Maxim V.C. Greenberg and Suhua Feng and Yana V. Bernatavichute and Steven E. Jacobsen},
  Journal                  = {Cell},
  Year                     = {2013},
  Number                   = {1-2},
  Pages                    = {352-364},
  Volume                   = {152},
  Doi                      = {10.1016/j.cell.2012.10.054},
}


@Article{krueger_2011,
  Title                    = {Bismark: a flexible aligner and methylation caller for {Bisulfite-Seq} applications},
  Author                   = {Felix Krueger and Simon R. Andrews},
  Journal                  = {Bioinformatics},
  Year                     = {2011},
  Number                   = {11},
  Pages                    = {1571-1572},
  Volume                   = {27},
  Doi                      = {10.1093/bioinformatics/btr167},
}


@Article{hebestreit_2013,
  Title                    = {Detection of significantly differentially methylated regions in targeted bisulfite sequencing data},
  Author                   = {Hebestreit, Katja and Dugas, Martin and Klein, Hans-Ulrich},
  Journal                  = {Bioinformatics},
  Year                     = {2013},
  Number                   = {13},
  Pages                    = {1647-1653},
  Volume                   = {29},
  Doi                      = {10.1093/bioinformatics/btt263},
}

@Article{benjamini_1995,
  Title                    = {Controlling the False Discovery Rate: A Practical and Powerful Approach to Multiple Testing},
  Author                   = {Yoav Benjamini and Yosef Hochberg},
  Journal                  = {Journal of the Royal Statistical Society. Series B (Methodological)},
  Year                     = {1995},
  Number                   = {1},
  Pages                    = {289-300},
  Volume                   = {57},
  Url                      = {http://www.jstor.org/stable/2346101}
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@Article{ferrari_2004,
  Title                    = {Beta {{Regression}} for {{Modelling Rates}} and {{Proportions}}},
  Author                   = {Ferrari, Silvia and Cribari-Neto, Francisco},
  Journal                  = {Journal of Applied Statistics},
  Year                     = {2004},
  Number                   = {7},
  Pages                    = {799-815},
  Volume                   = {31},
  Url                      = {http://www.jstor.org/stable/2346101},
  Doi                      = {10.1080/0266476042000214501}
}

@Article{gustafson_2024,
  author    = {Gustafson, JA and Gibson, SB and Damaraju, N and Zalusky, MP and Hoekzema, K and Twesigomwe, D and Yang, L and Snead, AA and Richmond, PA and De Coster, W and Olson, ND and Guarracino, A and Li, Q and Miller, AL and Goffena, J and Anderson, Z and Storz, SH and Ward, SA and Sinha, M and Gonzaga-Jauregui, C and Clarke, WE and Basile, AO and Corvelo, A and Reeves, C and Helland, A and Musunuri, RL and Revsine, M and Patterson, KE and Paschal, CR and Zakarian, C and Goodwin, S and Jensen, TD and Robb, E and McCombie, WR and Sedlazeck, FJ and Zook, JM and Montgomery, SB and Garrison, E and Kolmogorov, M and Schatz, MC and McLaughlin, RN Jr and Dashnow, H and Zody, MC and Loose, M and Jain, M and Eichler, EE and Miller, DE},
  title = {Nanopore sequencing of {1000 Genomes Project} samples to build a comprehensive catalog of human genetic variation},
  journal   = {Genome Research},
  year      = {2024},
  volume    = {34},
  number    = {11},
  pages     = {2061--2073},
  doi       = {10.1101/gr.279273.124},
  pmid      = {38496498},
  pmcid     = {PMC10942501},
  note      = {Originally published as a preprint in medRxiv: 2024.03.05.24303792},
  url       = {https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10942501/}
}