c23906903cec4aa0afdb3dd0df8af8e5 *DESCRIPTION
887c6d1e8e61f4322100f42d30472816 *NAMESPACE
06d4836fd0cbda15c4c973ec5901ede9 *NEWS.md
b07e48f356635135b317d681a1acafeb *R/AggregationMethods.R
cb13528f4ceb49fe9c8a851c3673b7c7 *R/Annotations.R
841173a05cc4a335ff4da8deb2b05ff2 *R/CAGEexp.R
8e6c778db9e26d8d6d0b2f60f5c8d08d *R/CAGEfightR.R
df6cc46bc7fae1a55b713f3d5065b35a *R/CAGEr-package.R
375ff87884718d4091c0625696ac41df *R/CAGEr.R
5f027b7f03ef14e02d81248a5456d2b1 *R/CTSS.R
989e309601ae654c3eb05f7b52a77e61 *R/ClusteringFunctions.R
f4b62f03b1eff0e99a067f99eb6276ec *R/ClusteringMethods.R
49f616c679b419a5526d4192f214d8bc *R/CorrelationMethods.R
2f5c13a61cbc7be804b672d109be5277 *R/CumulativeDistributionMethods.R
afb1b5b86f6e52e3dcc02b01d3e8d837 *R/Distclu.R
3f59326e8a564f3d59df0dff05bd9128 *R/ExportMethods.R
ef31d76818f3587aa6f87dbeae675feb *R/ExpressionProfilingMethods.R
48df5419a9f53f7da55d9aff1e6dced4 *R/GetMethods.R
a8b70f43414ecd975bff1bf18f8220d2 *R/ImportFunctions.R
91b5ee441405b737948579aaaa0a40ce *R/ImportMethods.R
f3460428da789476ac889a1c0e43d2d8 *R/MergingMethods.R
057f261887a7b8f82afd73a57de9cd09 *R/Multicore.R
ef7c5a3029d48a378f7eeee1881f0bf7 *R/NormalizationFunctions.R
5b80ad1c083e544ddc4baf0618ac36f2 *R/NormalizationMethods.R
e0572b84c0172c91af0c94333938578c *R/Paraclu.R
0c2367c6048a37e55602ecfca40e0915 *R/QCmethods.R
f496dffd26e307457172588045845822 *R/QuantileWidthMethods.R
2764537239a8e7262193a6353fd01035 *R/ResetMethods.R
0f82bf2f55224fd59840d3c8015ee6cc *R/Richness.R
8dfda0d08e1a1a1288c6056d04febb8d *R/RleDataFrame.R
7dc5844e286996c049143db36bf86c28 *R/SetMethods.R
8909398f5fc9b46f3b97737afd7bcb52 *R/ShiftingFunctions.R
91320fcadddeb305a6e901d99fec6615 *R/ShiftingMethods.R
1ae09ea8002f99d5a8c12e12d03c31b5 *R/StrandInvaders.R
9a5d9c00894d6a17ee44742145ed022a *R/TSSlogo.R
79742d05ca187981a57774dfee8bb4f0 *build/vignette.rds
9a6eac44ed3253ac08da37eded1c6a49 *data/FANTOM5humanSamples.RData
af26b6b1783b0c1134504525c89acf2e *data/FANTOM5mouseSamples.RData
2b0e518a19332fedbf5066101445c683 *data/exampleCAGEexp.RData
464446d4a150f745724fae64964037cf *data/exampleZv9_annot.RData
4b2895d3d015911a2a4bf8526498f57a *inst/CITATION
c41b6477f90f133073e17ae7f37cb446 *inst/doc/CAGE_Resources.R
b8e2106615fee9b971fde2a44e57c763 *inst/doc/CAGE_Resources.Rmd
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9feda1b82eb8be30b22fda3eed86db41 *inst/extdata/NCig10063_subsampled_str1.Signal.Unique.str1.out.wig.bw
87abd4a308a58f5c9fe312011bb0635a *inst/extdata/NCig10063_subsampled_str2.Signal.Unique.str2.out.wig.bw
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9cddf2176de72b0fca2f4b87a8d23cb0 *inst/extdata/Zf.prim6.rep1.chr17.ctss
62c0bd5a5b9baa59bbfcc029282eaf40 *inst/extdata/Zf.prim6.rep2.chr17.ctss
dc104c0cb7971574a11ba05371ace172 *inst/extdata/Zf.unfertilized.egg.chr17.ctss
5a63505c6bb09120d178d06a1e8f2988 *inst/rmarkdown/templates/CAGEexp/skeleton/skeleton.Rmd
559649f1b257356a97c8e44a4d5a4594 *inst/rmarkdown/templates/CAGEexp/template.yaml
61c52345e04f8a7753e1cd3fc010b903 *man/CAGEexp-class.Rd
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5a863b0f05912c0d48fb400ae265a4fd *man/cumulativeCTSSdistribution.Rd
5fb3034c702fdaa05ad9c47433078da8 *man/distclu.Rd
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1bf4a7e88f332a7f01551f202acb056f *man/exampleCAGEexp.Rd
5d3f2d28ab2eecdd1cef1bac0c721415 *man/exampleZv9_annot.Rd
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67377921e8c3b2cc82bc1c05e300e53d *man/expressionClasses.Rd
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4ecac79323fdd3c9658158807cf9eaf0 *man/getExpressionProfiles.Rd
3f4c2b71a0cc88fa4c803e917674fb15 *man/getShiftingPromoters.Rd
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4b27d6593a9467a905175114da47d06a *man/importPublicData.Rd
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905dc55e8ef80364cf7108398cfcf05b *vignettes/CAGEr.bib
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