Package: BadRegionFinder
Type: Package
Title: BadRegionFinder: an R/Bioconductor package for identifying
        regions with bad coverage
Version: 1.38.0
Date: 2016-03-07
Author: Sarah Sandmann
Maintainer: Sarah Sandmann <sarah.sandmann@uni-muenster.de>
Description: BadRegionFinder is a package for identifying regions with
        a bad, acceptable and good coverage in sequence alignment data
        available as bam files. The whole genome may be considered as
        well as a set of target regions. Various visual and textual
        types of output are available.
License: LGPL-3
Imports: VariantAnnotation, Rsamtools, biomaRt, GenomicRanges,
        S4Vectors, utils, stats, grDevices, graphics
Suggests: BSgenome.Hsapiens.UCSC.hg19
biocViews: Coverage, Sequencing, Alignment, WholeGenome, Classification
NeedsCompilation: no
git_url: https://git.bioconductor.org/packages/BadRegionFinder
git_branch: RELEASE_3_22
git_last_commit: 6395c38
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
Packaged: 2025-10-30 02:36:39 UTC; biocbuild
