a10923e3bafe6687867bf2534f88ceac *DESCRIPTION
4400d3ea40c85407fb2c19a6f0165649 *NAMESPACE
e48ff3c589b57d032de264907d58b2cb *NEWS
04ae24e9c8e2bb31a9f778c677709e83 *NEWS.md
b4b3df429b4c39d3d9390a910e019d44 *R/AllGenerics.R
90c9e1c2188c332084bf8472298253d5 *R/ChIPseeker-package.R
bcd14e695aaeca73ddd339ef9bc1c8f3 *R/GEO.R
d94c5940e354d91675ea61fa1394a955 *R/addGeneAnno.R
9bf8eb73a6aef10bad6f12c9360cf4d3 *R/annotatePeak.R
5dd62898893c689d0a96740400f1593f *R/covplot.R
e24c49851d81a5345bb1a459812669c2 *R/csAnno.R
dbf7df15e6a3bd39a36dcd37ebd771de *R/dplyr-verb.R
1dedd332f293d2808c24a9528b56adf4 *R/enrichOverlap.R
d018e18a1325af12aabc83b47dbb91ba *R/getFlankingGene.R
ee2358f1f8705fa12e759afd3b3eeccc *R/getGenomicAnnotation.R
def197408be26bc419cb7257c909ef04 *R/getNearestFeatureIndicesAndDistances.R
53d9c427b233816f755adabbab6d5532 *R/plotAnno.R
9728622fca8e860e797efb50ac2687e0 *R/plotDistToTSS.R
a83dfe3a766b561178b8c3b4129a7ff7 *R/plotTagMatrix.R
be71ab748f3f850fb73fc80b5d134b59 *R/readPeakFile.R
b385e2dae27634899dfd77f40c7d8c57 *R/seq2gene.R
f2ca9a94d2c23c835cb79423964d5f4b *R/subset.R
055be88fceaaa1c77663e858fc9745fe *R/tagMatrix.R
01cd3bb60674caf590c3bc8222097dd4 *R/upsetplot.R
f3c844af4bbd95c78a9f6b19cdafc965 *R/utilities.R
4ea5d390b86d44ce47c1937f8dd23341 *R/vennpie.R
ff9cae92c9a55ec78b9da8809872753b *R/vennplot.R
d6fd97c1690a3e4c5f06e2b694592bc7 *R/zzz.R
94921421229106d7f9fb07080eb785a2 *README.md
83595483084c5aa5e80b8e7cfa7a7b6f *build/vignette.rds
7f469250b24a3a5d60ba2a1830c09dbf *data/datalist
7611acfb8ba4f6f3734bca369911cba4 *data/gsminfo.rda
83b2ad1d3b410f2c78c4508e568d8f1a *data/tagMatrixList.rda
02bbd0a3103952e5a81903a6fa213477 *data/ucsc_release.rda
dacd254062ec9db06c439f858c09084b *inst/CITATION
5873fb653a7297f61aaeccf1a4b42819 *inst/doc/ChIPseeker.R
83bd7dc4f2f6858bb50c8b4f52abd50b *inst/doc/ChIPseeker.Rmd
34bbf049fcad35b6fec703913be20f3d *inst/doc/ChIPseeker.html
6fc72234bb1ba07fdd2f8e375e5c2a69 *inst/extdata/GEO_sample_data/GSM1174480_ARmo_0M_peaks.bed.gz
7a05f3078dae3c23247e144248e59b77 *inst/extdata/GEO_sample_data/GSM1174481_ARmo_1nM_peaks.bed.gz
160621ce086b500f66282d8943e336b7 *inst/extdata/GEO_sample_data/GSM1174482_ARmo_100nM_peaks.bed.gz
69b2280cf6ef7b912258fd914a1ba18c *inst/extdata/GEO_sample_data/GSM1295076_CBX6_BF_ChipSeq_mergedReps_peaks.bed.gz
d594205880e555d49c1524d0f84b396e *inst/extdata/GEO_sample_data/GSM1295077_CBX7_BF_ChipSeq_mergedReps_peaks.bed.gz
a419593573f3490bcc05730736fdbe70 *inst/extdata/processedGSM.rda
a26fcb8d90dd7c32efefb7655cd9aace *inst/extdata/sample_peaks.txt
388cba1d01b944710160242e1b9a0b34 *inst/test-plot/test-plotPeakProf.R
d69474ddcd5285c480ccaba3fcb7a201 *inst/test-plot/test-plotTagMatrix.R
ece39ab4bd2faa8d7cdfd2dfe9d1fe99 *man/ChIPseeker-package.Rd
fe2f1684aa5f2e399bbf1e2b4445f8af *man/annotatePeak.Rd
b8976f1d693046a49525259a2af691d2 *man/as.GRanges.Rd
88878bd5f293dfcffdea3bc01f3be83e *man/as.data.frame.csAnno.Rd
c1814a9c54bb012c823fd42a71b3a779 *man/check_upstream_and_downstream.Rd
ed9a93c7091404f212befea69afc8d43 *man/combine_csAnno.Rd
9ad604b029819d43736685cbb4078d4c *man/covplot.Rd
bcdd006e667eb249fbd6a7523b2b73e1 *man/csAnno-class.Rd
b266832f986a3ad50816a74956d0a22c *man/dotFun.Rd
7305c8477e1032ba2bb79c46650b9a7c *man/downloadGEObedFiles.Rd
aef28eb26d56266df5e9b9e55ff7d669 *man/downloadGSMbedFiles.Rd
0e79c86a9dfeb51e4f911aec4b772198 *man/dropAnno.Rd
a60382b273b69d37436e0422def23354 *man/enrichAnnoOverlap.Rd
93c82e95d3290cf1784115b333a70b9f *man/enrichPeakOverlap.Rd
f5be9b44780d53b7abb253b2d4379382 *man/getAnnoStat.Rd
8961775107bc9d9a5f955f257885d4e5 *man/getBioRegion.Rd
dc26d6b6ee2d363c309ef15445e4ea4b *man/getGEOInfo.Rd
76f05157fed1f7a948ebcf343859e71d *man/getGEOgenomeVersion.Rd
54bd7e6bf480ce5a0738e9e88208a71d *man/getGEOspecies.Rd
0f7a6b146f0f6d64829774c62f754ea8 *man/getGeneAnno.Rd
699563a52826c9d2a03a3c3452f8edb0 *man/getGenomicAnnotation.Rd
d9a45303dfc5a2319bb0e0b0ce0b372e *man/getNearestFeatureIndicesAndDistances.Rd
e5e6938c1862cc5748651f65d2084258 *man/getPromoters.Rd
feed932efb0659c4f21a56766b42c389 *man/getSampleFiles.Rd
0bbf69e87cc96b2c6eacba9b05c1d4f4 *man/getTagMatrix.Rd
959947d520568862f2bc63b5130239c5 *man/getTagMatrix.binning.internal.Rd
4305d5cc6d578cadafda608f74cb1fe3 *man/getTagMatrix.internal.Rd
19bf32d7707a037bd8f77ac545874fca *man/getTagMatrix2.Rd
59ad12a36b146a13343a8f7ed6df0d2e *man/getTagMatrix2.binning.internal.Rd
ab1e1db2b8396a1f1ac69cec65db0ae6 *man/getTagMatrix2.internal.Rd
87e5732141976c92682571792eb40486 *man/info.Rd
b24a70b603a50896c109f4bac9867052 *man/makeBioRegionFromGranges.Rd
086e4a8c225ef9101b473e2caefa2778 *man/overlap.Rd
8c99b5e4f7dc3bf74309024b8b11cfc6 *man/peakHeatmap.Rd
cbb75cb93a4280f4e0a3ebfbe21a0817 *man/peakHeatmap_multiple_Sets.Rd
d9fdf0fb3f6ea0de6dc035532a414c3d *man/peak_Profile_Heatmap.Rd
ad4d2757eadc78ab51fe06454bfd145f *man/plotAnnoBar-methods.Rd
a27b41cddd04c8b372c1e6db2a169d03 *man/plotAnnoBar.Rd
297ca80697d945e4404271b4ed0f1f2a *man/plotAnnoPie-methods.Rd
3396221004d2db2ff2da64aba633ae42 *man/plotAnnoPie.Rd
5db861db37d8a0e8b2190c9021cfc0fe *man/plotAvgProf.Rd
ea12731abae00e692a465b7763ebefa6 *man/plotAvgProf.binning.Rd
2aeffea4432fa05a30f538643244acfd *man/plotAvgProf2.Rd
9ba1062eb062f500ce6b03842654ff05 *man/plotDistToTSS-methods.Rd
3bcd0f043ad54d6cdfabf59ad8fe2b4f *man/plotDistToTSS.data.frame.Rd
8c877223a776b862500fe89a3e72d935 *man/plotMultiProf.Rd
9ad46f30d5a3a1a76efa0aa4ff931d01 *man/plotMultiProf.binning.Rd
3520cafa8ceca0f98fed7c3f289cc549 *man/plotMultiProf.binning.internal.Rd
66c073dc08c14024f99f3bebf7cb6c6c *man/plotMultiProf.normal.Rd
20c6a420305c42511745ed6bdfeefa9b *man/plotMultiProf.normal.internal.Rd
2d4676fe10e5a6b01b79e93d55276338 *man/plotPeakProf.Rd
46a84e86c8a68ff99bdb29176061161c *man/plotPeakProf2.Rd
4847f528f3f421fd33ec09ef189c2a82 *man/plotPeakProf_MultiWindows.Rd
bc4f27a6fbb31a3eb2770d01e16fa861 *man/readPeakFile.Rd
592cccf4b65e034d6e7ec94a2c41b874 *man/reexports.Rd
641c1e202f9b228704c44f753a2986fd *man/seq2gene.Rd
343e6b3fdf7e091f0df29f17add752e0 *man/show-methods.Rd
f76f6e4f5abcef207ccb46f0bc603442 *man/shuffle.Rd
9fdef115271606440801c11215edc48e *man/tagHeatmap.Rd
943ce0ce63c6ab4e1061257903b32a9d *man/upsetplot-methods.Rd
6f895f04055611a2bbf3d7018d396935 *man/vennpie-methods.Rd
7ccaa958e96435837b9fb60470aaf5a2 *man/vennplot.Rd
c1a03ca3fc4119774b2c0ec00a497f65 *man/vennplot.peakfile.Rd
f516d4f5017565c5cb9ca921f993ca2d *tests/testthat.R
258aae459cd83eb0d83bb924d40d9a4f *tests/testthat/test-bed.R
416bb71d81b4f8f199b1e34ffa7e22dc *tests/testthat/test-getTagMatrix.R
9fe0c60f122c20953ed3c574bf132944 *tests/testthat/test-txdb.R
83bd7dc4f2f6858bb50c8b4f52abd50b *vignettes/ChIPseeker.Rmd
cfa736de68d98ed6684470f8bde74ca9 *vignettes/ChIPseeker.bib
a04420bdba64e09188b1501d4026e2d5 *vignettes/figures/chrCoverage.png
7fafa578529713ad34a2b072492cbb96 *vignettes/figures/plotAvgProf_boot.png
b9d86a498b9e71b35191f78da76b946b *vignettes/figures/plotAvgProf_boot_list.png
241206ddc0580d83febbc160cd64d358 *vignettes/figures/plotPeakProf2_body_extend.png
57f26df091d8d713caa2aa341e9bce95 *vignettes/figures/plotPeakProf_body_boot_list_.png
cb147f393f735b60404c875ad4856238 *vignettes/figures/upset.png
dba5fd26a5db93ffe0ceb619aa4b964f *vignettes/figures/upset_vennpie.png
