Package: tripr
Type: Package
Title: T-cell Receptor/Immunoglobulin Profiler (TRIP)
Version: 1.15.0
Authors@R: c(
        person("Maria Th.", "Kotouza", role = "aut"),
        person("Katerina", "Gemenetzi", role = "aut"),
        person("Chrysi", "Galigalidou", role = "aut"),
        person("Elisavet", "Vlachonikola", role = "aut"),
        person("Nikolaos", "Pechlivanis", email = "inab.bioinformatics@lists.certh.gr", role = "cre"),
        person("Andreas", "Agathangelidis", role = "aut"),
        person("Raphael", "Sandaltzopoulos", role = "aut"),
        person("Pericles A.", "Mitkas", role = "aut"),
        person("Kostas", "Stamatopoulos", role = "aut"),
        person("Anastasia", "Chatzidimitriou", role = "aut"),
        person("Fotis E.", "Psomopoulos", role = "aut"),
        person("Iason", "Ofeidis", role = "aut"),
        person("Aspasia", "Orfanou", role = "aut")
        )
Description: TRIP is a software framework that provides analytics services on 
    antigen receptor (B cell receptor immunoglobulin, BcR IG | T cell receptor, 
    TR) gene sequence data. It is a web application written in R Shiny. It takes
    as input the output files of the IMGT/HighV-Quest tool. Users can select to 
    analyze the data from each of the input samples separately, or the combined 
    data files from all samples and visualize the results accordingly.
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: BatchEffect, MultipleComparison, GeneExpression,
        ImmunoOncology, TargetedResequencing
Imports: shinyjs, shinyFiles, plyr, data.table, DT, stringr,
        stringdist, plot3D, gridExtra, RColorBrewer, plotly, dplyr,
        config (>= 0.3.1), golem (>= 0.3.1), methods, grDevices,
        graphics, stats, utils, vegan
Enhances: parallel
Suggests: BiocGenerics, shinycssloaders, tidyverse, BiocManager,
        Biostrings, xtable, rlist, motifStack, knitr, rmarkdown,
        testthat (>= 3.0.0), fs, BiocStyle, RefManageR, biocthis, pryr
Depends: R (>= 4.1.0), shiny (>= 1.6.0), shinyBS
Collate: "tripr-package.R" "global.R" "helpers.R"
        "run_TRIP_without_ui.R" "app_config.R" "app_server.R"
        "app_ui.R" "run_app.R" "zzz.R"
URL: https://github.com/BiodataAnalysisGroup/tripr
BugReports: https://github.com/BiodataAnalysisGroup/tripr/issues
BiocType: Software
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Config/testthat/edition: 3
NeedsCompilation: no
Packaged: 2025-06-05 02:41:02 UTC; biocbuild
Author: Maria Th. Kotouza [aut],
  Katerina Gemenetzi [aut],
  Chrysi Galigalidou [aut],
  Elisavet Vlachonikola [aut],
  Nikolaos Pechlivanis [cre],
  Andreas Agathangelidis [aut],
  Raphael Sandaltzopoulos [aut],
  Pericles A. Mitkas [aut],
  Kostas Stamatopoulos [aut],
  Anastasia Chatzidimitriou [aut],
  Fotis E. Psomopoulos [aut],
  Iason Ofeidis [aut],
  Aspasia Orfanou [aut]
Maintainer: Nikolaos Pechlivanis <inab.bioinformatics@lists.certh.gr>
git_url: https://git.bioconductor.org/packages/tripr
git_branch: devel
git_last_commit: f6d9112
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
Built: R 4.5.0; ; 2025-06-05 14:15:44 UTC; windows
