Type: Package
Package: tidySingleCellExperiment
Title: Brings SingleCellExperiment to the Tidyverse
Version: 1.19.0
Authors@R: c(person("Stefano", "Mangiola", 
    comment=c(ORCID="0000-0001-7474-836X"),
    email="mangiolastefano@gmail.com",
    role=c("aut", "cre"))) 
Description: 'tidySingleCellExperiment' is an adapter that abstracts
    the 'SingleCellExperiment' container in the form of a 'tibble'.
    This allows *tidy* data manipulation, nesting, and plotting.
    For example, a 'tidySingleCellExperiment' is directly compatible
    with functions from 'tidyverse' packages `dplyr` and `tidyr`,
    as well as plotting with `ggplot2` and `plotly`.
    In addition, the package provides various utility
    functions specific to single-cell omics data analysis
    (e.g., aggregation of cell-level data to pseudobulks).
License: GPL-3
Depends: R (>= 4.4.0), SingleCellExperiment
Imports: dplyr, tidyr, ttservice (>= 0.4.0), SummarizedExperiment,
        tibble, ggplot2, magrittr, rlang, purrr, pkgconfig, lifecycle,
        methods, utils, S4Vectors, tidyselect, ellipsis, vctrs, pillar,
        stringr, cli, fansi, Matrix, stats
Suggests: BiocStyle, testthat, knitr, markdown, rmarkdown,
        SingleCellSignalR, SingleR, scater, scran, tidyHeatmap, igraph,
        GGally, uwot, celldex, dittoSeq, plotly
VignetteBuilder: knitr
RdMacros: lifecycle
Biarch: true
biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression,
        SingleCell, GeneExpression, Normalization, Clustering,
        QualityControl, Sequencing
Encoding: UTF-8
RoxygenNote: 7.3.2
URL: https://github.com/stemangiola/tidySingleCellExperiment
BugReports: https://github.com/stemangiola/tidySingleCellExperiment/issues
git_url: https://git.bioconductor.org/packages/tidySingleCellExperiment
git_branch: devel
git_last_commit: 020c3b6
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-05 02:35:56 UTC; biocbuild
Author: Stefano Mangiola [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7474-836X>)
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Built: R 4.5.0; ; 2025-06-05 14:12:30 UTC; windows
