addReducedDims	addReducedDims
aggregateFeaturesOverAssays	aggregateFeaturesOverAssays-deprecated
aggregateFeaturesOverAssays-deprecated	aggregateFeaturesOverAssays-deprecated
class:ScpModel	ScpModel-class
class:ScpModelFit	ScpModelFit-class
computeSCR	computeSCR
cumulativeSensitivityCurve	cumulativeSensitivityCurve
divideByReference	divideByReference
jaccardIndex	jaccardIndex
leduc_minimal	leduc_minimal
medianCVperCell	medianCVperCell
mqScpData	mqScpData
normalizeSCP	normalizeSCP
pep2qvalue	pep2qvalue
predictSensitivity	cumulativeSensitivityCurve
readSCP	readSCP
readSCPfromDIANN	readSCP
readSingleCellExperiment	readSCP
reportMissingValues	reportMissingValues
sampleAnnotation	sampleAnnotation
scp1	scp1
scpAnnotateResults	scpAnnotateResults
scpComponentAggregate	ScpModel-ComponentAnalysis
scpComponentAnalysis	ScpModel-ComponentAnalysis
scpComponentBiplot	ScpModel-ComponentAnalysis
scpComponentPlot	ScpModel-ComponentAnalysis
scpDifferentialAggregate	ScpModel-DifferentialAnalysis
scpDifferentialAnalysis	ScpModel-DifferentialAnalysis
scpKeepEffect	ScpModel-DataCorrection
scplainer	scplainer
ScpModel	ScpModel-class
ScpModel-class	ScpModel-class
ScpModel-ComponentAnalysis	ScpModel-ComponentAnalysis
ScpModel-DataCorrection	ScpModel-DataCorrection
ScpModel-DifferentialAnalysis	ScpModel-DifferentialAnalysis
ScpModel-VarianceAnalysis	ScpModel-VarianceAnalysis
ScpModel-Workflow	ScpModel-Workflow
scpModelComponentMethods	ScpModel-ComponentAnalysis
scpModelEffects	ScpModel-class
scpModelFilterNPRatio	ScpModel-class
scpModelFilterPlot	ScpModel-Workflow
scpModelFilterThreshold	ScpModel-class
scpModelFilterThreshold<-	ScpModel-class
ScpModelFit	ScpModelFit-class
ScpModelFit-class	ScpModelFit-class
scpModelFormula	ScpModel-class
scpModelInput	ScpModel-class
scpModelNames	ScpModel-class
scpModelResiduals	ScpModel-class
scpModelWorkflow	ScpModel-Workflow
scpRemoveBatchEffect	ScpModel-DataCorrection
scpVarianceAggregate	ScpModel-VarianceAnalysis
scpVarianceAnalysis	ScpModel-VarianceAnalysis
scpVariancePlot	ScpModel-VarianceAnalysis
scpVolcanoPlot	ScpModel-DifferentialAnalysis
