# RegioneReloaded: Multiple Association for Genomic Region Sets

## Documentation for package ‘regioneReloaded’ version 1.11.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

AlienGenome | AlienGenome
AlienRSList_broad | AlienRSList_broad
AlienRSList_narrow | AlienRSList_narrow
chooseHclustMet | chooseHclustMet
createUniverse | createUniverse
crosswisePermTest | crosswisePermTest
cw_Alien | cw_Alien
cw_Alien_RaR | cw_Alien_RaR
cw_Alien_ReG | cw_Alien_ReG
cw_Alien_ReG_no_Square | cw_Alien_ReG_no_Square
cw_Alien_ReR | cw_Alien_ReR
genoMatriXeR-class | genoMatriXeR Class
getHClust | getHClust
getMatrix | Get Matrix
getMultiEvaluation | getMultiEvaluation
getParameters | getParameters
gMXR | genoMatriXeR Class
makeCrosswiseMatrix | makeCrosswiseMatrix
makeLZMatrix | Make Local Z-Score Matrix
mLZS | multiLocalZScore Class
mLZ_regA_ReG | mLZ_regA_ReG
mLZ_regA_ReG_br | mLZ_regA_ReG_br
mLZ_regD_ReG | mLZ_regD_ReG
multiLocalZscore | multiLocalZscore
multiLocalZScore-class | multiLocalZScore Class
plotCrosswiseDimRed | plotCrosswiseDimRed
plotCrosswiseMatrix | plotCrosswiseMatrix
plotLocalZScoreMatrix | Plot Local Z-Score Matrix
plotSingleLZ | plotSingleLZ
plotSinglePT | plotSinglePT
randomizeRegionsPerc | randomizeRegionsPerc
similarRegionSet | similar RegionSets