Package: r3Cseq
Version: 1.55.1
Title: Analysis of Chromosome Conformation Capture and Next-generation
        Sequencing (3C-seq)
Author: Supat Thongjuea, MRC WIMM Centre for Computational Biology, Weatherall
        Institute of Molecular Medicine, University of Oxford, UK
        <supat.thongjuea@imm.ox.ac.uk>
Maintainer: Supat Thongjuea <supat.thongjuea@imm.ox.ac.uk> or <supat.thongjuea@gmail.com>
Depends: GenomicRanges, Rsamtools, rtracklayer, VGAM, qvalue
Imports: methods, Seqinfo, IRanges, Biostrings, data.table, sqldf,
        RColorBrewer
Suggests: BSgenome.Mmusculus.UCSC.mm9.masked,
        BSgenome.Mmusculus.UCSC.mm10.masked,
        BSgenome.Hsapiens.UCSC.hg18.masked,
        BSgenome.Hsapiens.UCSC.hg19.masked,
        BSgenome.Rnorvegicus.UCSC.rn5.masked
Description: This package is used for the analysis of long-range chromatin interactions from 3C-seq assay.
License: GPL-3
URL: http://r3cseq.genereg.net,https://github.com/supatt-lab/r3Cseq/
Collate: AllClasses.R AllGenerics.R Export.R FunctionInCommon.R
        FunctionsForBatchAnalysis.R RestrictionEnzymeFunctions.R
        FunctionsForNoReplicationAnalysis.R Report.R Visualize3Cseq.R
        Annotation.R
biocViews: Preprocessing, Sequencing
git_url: https://git.bioconductor.org/packages/r3Cseq
git_branch: devel
git_last_commit: 87fafb1
git_last_commit_date: 2025-07-24
Repository: Bioconductor 3.22
Date/Publication: 2025-07-25
NeedsCompilation: no
Packaged: 2025-07-26 01:34:34 UTC; biocbuild
Built: R 4.5.1; ; 2025-07-26 13:51:31 UTC; windows
