# Functions for the projection of weights from PCA, CoGAPS, NMF, correlation, and clustering

## Documentation for package ‘projectR’ version 1.25.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

alluvialMat | alluvialMat
AP.RNAseq6l3c3t | CoGAPS patterns and genes weights for p.RNAseq6l3c3t
aucMat | aucMat
bonferroniCorrectedDifferences | bonferroniCorrectedDifferences
cluster2pattern | Generic cluster2pattern function
cluster2pattern-class | cluster2pattern
cluster2pattern-method | Generic cluster2pattern function
clusterPlotR | Generic clusterPlotR function
clusterPlotR-method | Generic clusterPlotR function
correlateR | correlateR
correlateR-class | correlateR
CR.RNAseq6l3c3t | CogapsResult object for p.RNAseq6l3c3t
cr_microglial | CogapsResult object for microglial_counts
geneMatchR | Generic geneMatchR function
getTSNE | getTSNE
getUMAP | getUMAP
glial_counts | log-normalized count data from astrocytes and oligodendrocytes in the p6 mouse cortex.
initialize-method | Constructor for cluster2pattern
initialize-method | Constructor for correlateR
initialize-method | Constructor for rotatoR
intersectoR | Generic intersectoR function
intersectoR-method | Generic intersectoR function
map.ESepiGen4c1l | RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
map.RNAseq6l3c3t | RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
microglial_counts | log-normalized count data from microglial cells in the p6 mouse cortex.
multivariateAnalysisR | Generic multivariateAnalysisR function
multivariateAnalysisR_seurat_test | Truncated Seurat Object with latent space projection done to unspecified cells in different stages for multivariateAnalysisR analysis
p.ESepiGen4c1l | RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
p.RNAseq6l3c3t | RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
pd.ESepiGen4c1l | RNAseqing and ChIPSeq of matched genes in differentiated human iPS cells
pd.RNAseq6l3c3t | RNAseqing from human 3 iPS & 3 ES cell lines in 3 experimental condition at 3 time points
pdVolcano | pdVolcano
plotConfidenceIntervals | plotConfidenceIntervals
plotVolcano | plotVolcano
projectionDriveR | projectionDriveR
projectR | Generic projectR function
projectR-method | Generic projectR function
retinal_patterns | CoGAPS patterns learned from the developing mouse retina.
rotatoR | rotatoR
rotatoR-class | rotatoR