Package: plyranges
Type: Package
Title: A fluent interface for manipulating GenomicRanges
Version: 1.29.1
Authors@R: c(
      person("Stuart", "Lee", role = c("aut"), 
             comment = c(ORCID = "0000-0003-1179-8436")),
      person("Michael", "Lawrence", role = c("aut", "ctb")),
      person("Dianne", "Cook", role = c("aut", "ctb")),
      person("Spencer", "Nystrom", role = c("ctb"), 
             comment = c(ORCID = "0000-0003-1000-1579")),
      person("Pierre-Paul", "Axisa", role=c("ctb")),
      person("Michael", "Love", role = c("ctb","cre"),
             email = "michaelisaiahlove@gmail.com")
      )
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
Description: A dplyr-like interface for interacting with the common Bioconductor 
    classes Ranges and GenomicRanges. By providing a grammatical
    and consistent way of manipulating these classes their accessiblity for new
    Bioconductor users is hopefully increased.
Depends: R (>= 3.5), BiocGenerics, IRanges (>= 2.12.0), GenomicRanges
        (>= 1.28.4)
Imports: methods, dplyr, rlang (>= 0.2.0), magrittr, tidyselect (>=
        1.0.0), rtracklayer, GenomicAlignments, Seqinfo, Rsamtools,
        S4Vectors (>= 0.23.10), utils
biocViews: Infrastructure, DataRepresentation, WorkflowStep, Coverage
BugReports: https://github.com/tidyomics/plyranges
License: Artistic-2.0
Encoding: UTF-8
ByteCompile: true
Suggests: knitr, BiocStyle, rmarkdown, testthat (>= 2.1.0),
        HelloRanges, HelloRangesData, BSgenome.Hsapiens.UCSC.hg19,
        pasillaBamSubset, covr, ggplot2
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Collate: 'class-AnchoredRanges.R' 'class-Operator.R'
        'class-DeferredGenomicRanges.R' 'class-GroupedRanges.R'
        'dplyr-arrange.R' 'dplyr-filter.R' 'dplyr-groups.R'
        'dplyr-mutate.R' 'dplyr-select.R' 'dplyr-slice.R'
        'dplyr-summarize.R' 'endo-coverage.R' 'endo-tile.R' 'io-bam.R'
        'io-bed.R' 'io-bigwig.R' 'io-gff.R' 'io-wig.R'
        'methods-DeferredGenomicRanges.R' 'methods-Operator.R'
        'plyranges.R' 'ranges-add-distance.R' 'ranges-anchors.R'
        'ranges-arithmetic-flank.R' 'ranges-arithmetic-setters.R'
        'ranges-arithmetic-shift.R' 'ranges-arithmetic-stretch.R'
        'ranges-bind.R' 'ranges-chop.R' 'ranges-colwise.R'
        'ranges-construct.R' 'ranges-disjoin.R' 'ranges-eval-quo.R'
        'ranges-eval.R' 'ranges-expand.R' 'ranges-genomeinfo.R'
        'ranges-join-follow.R' 'ranges-join-nearest.R'
        'ranges-join-precede.R' 'ranges-overlap-count.R'
        'ranges-overlap-filter.R' 'ranges-overlap-find.R'
        'ranges-overlap-groups.R' 'ranges-overlap-joins-intersect.R'
        'ranges-overlap-joins-outer.R' 'ranges-overlap-self-joins.R'
        'ranges-pairs.R' 'ranges-rangewise-setops.R' 'ranges-reduce.R'
        'ranges-setops.R' 'reexports.R'
git_url: https://git.bioconductor.org/packages/plyranges
git_branch: devel
git_last_commit: 6a65251
git_last_commit_date: 2025-07-23
Repository: Bioconductor 3.22
Date/Publication: 2025-07-24
NeedsCompilation: no
Packaged: 2025-07-25 01:28:11 UTC; biocbuild
Author: Stuart Lee [aut] (ORCID: <https://orcid.org/0000-0003-1179-8436>),
  Michael Lawrence [aut, ctb],
  Dianne Cook [aut, ctb],
  Spencer Nystrom [ctb] (ORCID: <https://orcid.org/0000-0003-1000-1579>),
  Pierre-Paul Axisa [ctb],
  Michael Love [ctb, cre]
Built: R 4.5.1; ; 2025-07-25 13:57:05 UTC; windows
