# R wrapper for Progenetix

## Documentation for package ‘pgxRpi’ version 1.5.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

hg19_cytoband | A dataframe containing cytoband annotation details extracted from the hg19 gennome. It is used for CNV frequency visualization.
hg38_cytoband | A dataframe containing cytoband annotation details extracted from the hg38 gennome. It is used for CNV frequency visualization.
pgxFreqplot | Plot CNV frequency data
pgxLoader | Load data from Progenetix database via the Beacon v2 API with some extensions
pgxMetaplot | Plot survival data of individuals
pgxSegprocess | Extract, analyse and visualize "pgxseg" files
segtoFreq | Calculate CNV frequency data from given segment data