Package: nullranges
Title: Generation of null ranges via bootstrapping or covariate
        matching
Version: 1.15.1
Authors@R: c(
    person("Michael", "Love", role = c("aut", "cre"),
      email = "michaelisaiahlove@gmail.com",
      comment = c(ORCID = "0000-0001-8401-0545")),
    person("Wancen", "Mu", role = c("aut"),
      comment = c(ORCID = "0000-0002-5061-7581")),
    person("Eric", "Davis", role = c("aut"),
      comment = c(ORCID = "0000-0003-4051-3217")),
    person("Douglas", "Phanstiel", role = c("aut"),
      comment = c(ORCID = "0000-0003-2123-0051")),
    person("Stuart", "Lee", role = c("aut"),
      comment = c(ORCID = "0000-0003-1179-8436")),
    person("Mikhail", "Dozmorov", role = c("ctb")),
    person("Tim", "Triche", role = c("ctb")),
    person("CZI", role = c("fnd"))
    )
Description: Modular package for generation of sets of ranges
    representing the null hypothesis. These can take the form
    of bootstrap samples of ranges (using the block bootstrap
    framework of Bickel et al 2010), or sets of control ranges
    that are matched across one or more covariates. nullranges
    is designed to be inter-operable with other packages for
    analysis of genomic overlap enrichment, including the
    plyranges Bioconductor package.
Suggests: testthat, knitr, rmarkdown, ks, DNAcopy, RcppHMM,
        AnnotationHub, ExperimentHub, GenomeInfoDb, nullrangesData,
        excluderanges, ensembldb, EnsDb.Hsapiens.v86,
        BSgenome.Hsapiens.UCSC.hg38, patchwork, plotgardener, dplyr,
        magrittr, tidyr, cobalt, DiagrammeR, MatchIt, mariner
Imports: stats, IRanges, GenomicRanges, Seqinfo, methods, rlang,
        S4Vectors, scales, InteractionSet, ggplot2, grDevices,
        plyranges, data.table, progress, ggridges
biocViews: Visualization, GeneSetEnrichment, FunctionalGenomics,
        Epigenetics, GeneRegulation, GeneTarget, GenomeAnnotation,
        Annotation, GenomeWideAssociation, HistoneModification,
        ChIPSeq, ATACSeq, DNaseSeq, RNASeq, HiddenMarkovModel
URL: https://nullranges.github.io/nullranges,
        https://github.com/nullranges/nullranges
BugReports: https://support.bioconductor.org/tag/nullranges/
License: GPL-3
Encoding: UTF-8
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
git_url: https://git.bioconductor.org/packages/nullranges
git_branch: devel
git_last_commit: 077bf27
git_last_commit_date: 2025-07-26
Repository: Bioconductor 3.22
Date/Publication: 2025-07-27
NeedsCompilation: no
Packaged: 2025-07-28 01:01:11 UTC; biocbuild
Author: Michael Love [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-8401-0545>),
  Wancen Mu [aut] (ORCID: <https://orcid.org/0000-0002-5061-7581>),
  Eric Davis [aut] (ORCID: <https://orcid.org/0000-0003-4051-3217>),
  Douglas Phanstiel [aut] (ORCID:
    <https://orcid.org/0000-0003-2123-0051>),
  Stuart Lee [aut] (ORCID: <https://orcid.org/0000-0003-1179-8436>),
  Mikhail Dozmorov [ctb],
  Tim Triche [ctb],
  CZI [fnd]
Maintainer: Michael Love <michaelisaiahlove@gmail.com>
Depends: R (>= 4.2.0)
Built: R 4.5.1; ; 2025-07-28 14:05:58 UTC; windows
