Package: nuCpos
Title: An R package for prediction of nucleosome positions
Authors@R: c(person("Hiroaki", "Kato", role=c("aut", "cre"), 
			email="hkato@med.shimane-u.ac.jp"), 
		person("Takeshi", "Urano", role=c("ctb")))
Version: 1.27.0
Description: nuCpos, a derivative of NuPoP, is an R package for prediction of nucleosome positions. nuCpos calculates local and whole nucleosomal histone binding affinity (HBA) scores for a given 147-bp sequence. Note: This package was designed to demonstrate the use of chemical maps in prediction. As the parental package NuPoP now provides chemical-map-based prediction, the function for dHMM-based prediction was removed from this package. nuCpos continues to provide functions for HBA calculation.
Author: Hiroaki Kato, Takeshi Urano
License: GPL-2
Depends: R (>= 4.2.0)
Imports: graphics, methods
Suggests: NuPoP, Biostrings, testthat
biocViews: Genetics, Epigenetics, NucleosomePositioning
Date: 2023-02-16
NeedsCompilation: yes
git_url: https://git.bioconductor.org/packages/nuCpos
git_branch: devel
git_last_commit: 47006d6
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
Packaged: 2025-06-05 00:48:10 UTC; biocbuild
Maintainer: Hiroaki Kato <hkato@med.shimane-u.ac.jp>
Built: R 4.5.0; ; 2025-06-05 13:34:10 UTC; windows
