Package: miRSM
Type: Package
Title: Inferring miRNA sponge modules in heterogeneous data
Version: 2.5.4
Authors@R: 
    person(given = "Junpeng", 
           family = "Zhang", 
           role=c("aut", "cre"), 
           email = "zjp@dali.edu.cn")
Description: The package aims to identify miRNA sponge or ceRNA modules in heterogeneous data.
    It provides several functions to study miRNA sponge modules at single-sample 
    and multi-sample levels, including popular methods for inferring gene modules 
    (candidate miRNA sponge or ceRNA modules), and two functions to identify miRNA sponge 
    modules at single-sample and multi-sample levels, as well as several functions 
    to conduct modular analysis of miRNA sponge modules.
Depends: R (>= 4.4.0)
License: GPL-3
URL: https://github.com/zhangjunpeng411/miRSM
Encoding: UTF-8
biocViews: GeneExpression, BiomedicalInformatics, Clustering,
        GeneSetEnrichment, Microarray, Software, GeneRegulation,
        GeneTarget
RoxygenNote: 7.3.2
Imports: WGCNA, flashClust, dynamicTreeCut, GFA, igraph, RColorBrewer,
        grid, MCL, fabia, NMF, biclust, iBBiG, BicARE, isa2, methods,
        rJava, BiBitR, rqubic, Biobase, PMA, stats, dbscan, mclust,
        SOMbrero, ppclust, Rcpp, utils, SummarizedExperiment, GSEABase,
        org.Hs.eg.db, clusterProfiler, ReactomePA, DOSE,
        MatrixCorrelation, energy
Suggests: BiocStyle, knitr, rmarkdown, testthat
VignetteBuilder: knitr
BugReports: https://github.com/zhangjunpeng411/miRSM/issues
git_url: https://git.bioconductor.org/packages/miRSM
git_branch: devel
git_last_commit: 600f2c8
git_last_commit_date: 2025-06-22
Repository: Bioconductor 3.22
Date/Publication: 2025-06-22
NeedsCompilation: yes
Packaged: 2025-06-23 00:15:09 UTC; biocbuild
Author: Junpeng Zhang [aut, cre]
Maintainer: Junpeng Zhang <zjp@dali.edu.cn>
Built: R 4.5.1; x86_64-w64-mingw32; 2025-06-23 12:36:37 UTC; windows
Archs: x64
