# Plot customizable linear genomes displaying arbitrary data

## Documentation for package ‘karyoploteR’ version 1.35.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

addGeneNames | addGeneNames
autotrack | autotrack
colByCategory | colByCategory
colByChr | colByChr
colByRegion | colByRegion
colByValue | colByValue
darker | darker
filterParams | filterParams
findIntersections | findIntersections
getChromosomeNamesBoundingBox | getChromosomeNamesBoundingBox
getColorSchemas | getColorSchemas
getCytobandColors | getCytobandColors
getCytobands | getCytobands
getDataPanelBoundingBox | getDataPanelBoundingBox
getDefaultPlotParams | getDefaultParameters
getMainTitleBoundingBox | getMainTitleBoundingBox
getTextSize | getTextSize
getVariantsColors | getVariantsColors
horizonColors | horizonColors
is.color | is.color
kpAbline | kpAbline
kpAddBaseNumbers | kpAddBaseNumbers
kpAddChromosomeNames | kpAddChromosomeNames
kpAddChromosomeSeparators | kpAddChromosomeSeparators
kpAddColorRect | kpAddColorRect
kpAddCytobandLabels | kpAddCytobandLabels
kpAddCytobands | kpAddCytobands
kpAddCytobandsAsLine | kpAddCytobandsAsLine
kpAddLabels | kpAddLabels
kpAddMainTitle | kpAddMainTitle
kpArea | kpArea
kpArrows | kpArrows
kpAxis | kpAxis
kpBars | kpBars
kpDataBackground | kpDataBackground
kpHeatmap | kpHeatmap
kpLines | kpLines
kpPlotBAMCoverage | kpPlotBAMCoverage
kpPlotBAMDensity | kpPlotBAMDensity
kpPlotBigWig | kpPlotBigWig
kpPlotCoverage | kpPlotCoverage
kpPlotDensity | kpPlotDensity
kpPlotGenes | kpPlotGenes
kpPlotHorizon | kpPlotHorizon
kpPlotLinks | kpPlotLinks
kpPlotLoess | kpPlotLoess
kpPlotManhattan | kpPlotManhattan
kpPlotMarkers | kpPlotMarkers
kpPlotNames | kpPlotNames
kpPlotRainfall | kpPlotRainfall
kpPlotRegions | kpPlotRegions
kpPlotRibbon | kpPlotRibbon
kpPlotTranscripts | kpPlotTranscripts
kpPoints | kpPoints
kpPolygon | kpPolygon
kpRect | kpRect
kpSegments | kpSegments
kpText | kpText
lighter | lighter
makeGenesDataFromTxDb | makeGenesDataFromTxDb
mergeTranscripts | mergeTranscripts
plotDefaultPlotParams | plotDefaultPlotParameters
plotKaryotype | plotKaryotype
plotPalettes | plotPalette
prepareParameters2 | prepareParameters2
prepareParameters4 | prepareParameters4
processClipping | processClipping
transparent | transparent