Package: geomeTriD
Type: Package
Title: A R/Bioconductor package for interactive 3D plot of epigenetic
        data or single cell data
Version: 1.3.16
Authors@R: c(person(given="Jianhong", family="Ou", email="jou@morgridge.org", 
        role=c("aut", "cre"), comment=c(ORCID="0000-0002-8652-2488")))
Description: geomeTriD (Three Dimensional Geometry Package) 
  create interactive 3D plots using the GL library with the 'three.js' 
  visualization library (https://threejs.org) or the rgl library.
  In addition to creating interactive 3D plots, the application also generates 
  simplified models in 2D.
  These 2D models provide a more straightforward visual representation,
  making it easier to analyze and interpret the data quickly.
  This functionality ensures that users have access to both detailed 
  three-dimensional visualizations and more accessible two-dimensional views,
  catering to various analytical needs.
License: MIT + file LICENSE
Depends: R (>= 4.4.0)
Imports: aricode, BiocGenerics, Biostrings, clue, cluster, dbscan,
        future.apply, Seqinfo, GenomicRanges, graphics, grDevices,
        grid, htmlwidgets, igraph, InteractionSet, IRanges, MASS,
        Matrix, methods, plotrix, progressr, RANN, rgl, rjson,
        S4Vectors, scales, stats, trackViewer
Suggests: RUnit, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg19.knownGene,
        BSgenome.Hsapiens.UCSC.hg19, manipulateWidget, shiny,
        BiocStyle, knitr, rmarkdown, testthat
biocViews: Visualization
VignetteBuilder: knitr
RoxygenNote: 7.3.2
Encoding: UTF-8
URL: https://github.com/jianhong/geomeTriD
BugReports: https://github.com/jianhong/geomeTriD/issues
git_url: https://git.bioconductor.org/packages/geomeTriD
git_branch: devel
git_last_commit: 832ae3f
git_last_commit_date: 2025-07-23
Repository: Bioconductor 3.22
Date/Publication: 2025-07-25
NeedsCompilation: no
Packaged: 2025-07-25 23:26:39 UTC; biocbuild
Author: Jianhong Ou [aut, cre] (ORCID: <https://orcid.org/0000-0002-8652-2488>)
Maintainer: Jianhong Ou <jou@morgridge.org>
Built: R 4.5.1; ; 2025-07-26 13:13:01 UTC; windows
