Package: gINTomics
Title: Multi-Omics data integration
Version: 1.5.0
Authors@R: c(person("Angelo", "Velle", role = c("cre", "aut"),
                    email = "angelo.velle@unipd.it",
                    comment = c(ORCID = "0000-0002-4010-6390")),
             person("Francesco", "Patane'", role = "aut",
                     email = "francesco.patane@unipd.it", 
                     comment = c(ORCID = "0009-0001-8619-447X")),
             person("Chiara", "Romualdi", role = "aut", 
                    email = "chiara.romualdi@unipd.it",
                    comment = c(ORCID = "0000-0003-4792-9047")))
Description: gINTomics is an R package for Multi-Omics data integration and 
            visualization.
            gINTomics is designed to detect the association between the 
            expression of a target and of its regulators, taking into account 
            also their genomics modifications such as Copy Number Variations 
            (CNV) and methylation. 
            What is more, gINTomics allows integration results visualization 
            via a Shiny-based interactive app.
License: AGPL-3
biocViews: GeneExpression, RNASeq, Microarray, Visualization,
        CopyNumberVariation, GeneTarget
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Imports: BiocParallel, biomaRt, OmnipathR, edgeR, ggplot2, ggridges,
        gtools, MultiAssayExperiment, plyr, stringi, stringr,
        SummarizedExperiment, methods, stats, reshape2, randomForest,
        limma, org.Hs.eg.db, org.Mm.eg.db, BiocGenerics,
        GenomicFeatures, ReactomePA, clusterProfiler, dplyr,
        AnnotationDbi, TxDb.Hsapiens.UCSC.hg38.knownGene,
        TxDb.Mmusculus.UCSC.mm10.knownGene, shiny, GenomicRanges,
        ggtree, shinydashboard, plotly, DT, MASS,
        InteractiveComplexHeatmap, ComplexHeatmap, visNetwork,
        shiny.gosling, ggvenn, RColorBrewer, utils, grDevices, callr,
        circlize, MethylMix, shinyjs
Depends: R (>= 4.4.0)
LazyData: false
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
BugReports: https://github.com/angelovelle96/gINTomics/issues
URL: https://github.com/angelovelle96/gINTomics
git_url: https://git.bioconductor.org/packages/gINTomics
git_branch: devel
git_last_commit: f809e93
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-04 23:26:37 UTC; biocbuild
Author: Angelo Velle [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-4010-6390>),
  Francesco Patane' [aut] (ORCID:
    <https://orcid.org/0009-0001-8619-447X>),
  Chiara Romualdi [aut] (ORCID: <https://orcid.org/0000-0003-4792-9047>)
Maintainer: Angelo Velle <angelo.velle@unipd.it>
Built: R 4.5.0; ; 2025-06-05 13:06:27 UTC; windows
