Package: fedup
Title: Fisher's Test for Enrichment and Depletion of User-Defined
        Pathways
Version: 1.17.0
Date: 2021-02-17
Depends: R (>= 4.1)
Authors@R: 
    person("Catherine", "Ross",
        email = "catherinem.ross@mail.utoronto.ca",
        role = c("aut", "cre"))
Description: 
    An R package that tests for enrichment and depletion of user-defined
    pathways using a Fisher's exact test. The method is designed for versatile
    pathway annotation formats (eg. gmt, txt, xlsx) to allow the user to run
    pathway analysis on custom annotations. This package is also
    integrated with Cytoscape to provide network-based pathway visualization
    that enhances the interpretability of the results.
biocViews: GeneSetEnrichment, Pathways, NetworkEnrichment, Network
Imports: openxlsx, tibble, dplyr, data.table, ggplot2, ggthemes,
        forcats, RColorBrewer, RCy3, utils, stats
Suggests: biomaRt, tidyr, testthat, knitr, rmarkdown, devtools, covr
LazyData: false
Encoding: UTF-8
Language: en-US
License: MIT + file LICENSE
VignetteBuilder: knitr
URL: https://github.com/rosscm/fedup
BugReports: https://github.com/rosscm/fedup/issues
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/fedup
git_branch: devel
git_last_commit: 4e5f2ea
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-04 23:02:45 UTC; biocbuild
Author: Catherine Ross [aut, cre]
Maintainer: Catherine Ross <catherinem.ross@mail.utoronto.ca>
Built: R 4.5.0; ; 2025-06-05 12:58:38 UTC; windows
