# Phylogenetic, Distance and Other Calculations on VCF and Fasta Files

## Documentation for package ‘fastreeR’ version 1.99.4

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

dist2clusters | Perform Hierarchical Clustering and tree pruning on a distance matrix
dist2tree | Generate phylogenetic tree from samples of a distance matrix
fasta2dist | Calculate distances between sequences of a FASTA file
tree2clusters | Perform Hierarchical Clustering and tree pruning on a phylogenetic tree
vcf2clusters | Perform Hierarchical Clustering and tree pruning on samples of VCF file
vcf2dist | Calculate distances between samples of a VCF file
vcf2istats | Calculate various per sample statistics from a VCF file
vcf2tree | Generate phylogenetic tree from samples of a VCF file