Package: dyebias
Title: The GASSCO method for correcting for slide-dependent
        gene-specific dye bias
Version: 1.69.0
Date: 2 March 2016
Author: Philip Lijnzaad and Thanasis Margaritis
Description: Many two-colour hybridizations suffer from a dye bias that is
  both gene-specific and slide-specific. The former depends on the content of
  the nucleotide used for labeling; the latter depends on the labeling
  percentage. The slide-dependency was hitherto not recognized, and made
  addressing the artefact impossible.  Given a reasonable number of
  dye-swapped pairs of hybridizations, or of same vs. same hybridizations,
  both the gene- and slide-biases can be estimated and corrected using the
  GASSCO method (Margaritis et al., Mol. Sys. Biol. 5:266 (2009),
  doi:10.1038/msb.2009.21)
Maintainer: Philip Lijnzaad <plijnzaad@gmail.com>
License: GPL-3
Depends: R (>= 1.4.1), marray, Biobase
Suggests: limma, convert, GEOquery, dyebiasexamples, methods
URL: http://www.holstegelab.nl/publications/margaritis_lijnzaad
biocViews: Microarray, TwoChannel, QualityControl, Preprocessing
git_url: https://git.bioconductor.org/packages/dyebias
git_branch: devel
git_last_commit: 76dd340
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-04 22:44:29 UTC; biocbuild
Built: R 4.5.0; ; 2025-06-05 12:54:03 UTC; windows
