Package: cytofQC
Type: Package
Title: Labels normalized cells for CyTOF data and assigns probabilities
        for each label
Version: 1.9.0
Authors@R: c(
    person("Jill", "Lundell", role = c("aut", "cre"), email = "jflundell@gmail.com", comment = c(ORCID = "0000-0002-6048-4700")),
    person("Kelly", "Street", role = "aut", email = "street.kelly@gmail.com", comment = c(ORCID = "0000-0001-6379-5013")))
Description: cytofQC is a package for initial cleaning of CyTOF data. It uses a semi-supervised approach for labeling cells with their most likely data type (bead, doublet, debris, dead) and the probability that they belong to each label type. This package does not remove data from the dataset, but provides labels and information to aid the data user in cleaning their data. Our algorithm is able to distinguish between doublets and large cells.  
License: Artistic-2.0
URL: https://github.com/jillbo1000/cytofQC
BugReports: https://github.com/jillbo1000/cytofQC/issues
biocViews: Software, SingleCell, Annotation
Encoding: UTF-8
Imports: CATALYST, flowCore, e1071, EZtune, gbm, ggplot2, hrbrthemes,
        matrixStats, randomForest, rmarkdown, SingleCellExperiment,
        stats, SummarizedExperiment, ssc, S4Vectors, graphics, methods
RoxygenNote: 7.2.3
Suggests: gridExtra, knitr, RColorBrewer, testthat, uwot
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/cytofQC
git_branch: devel
git_last_commit: 82c3fdc
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-04 22:25:08 UTC; biocbuild
Author: Jill Lundell [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6048-4700>),
  Kelly Street [aut] (ORCID: <https://orcid.org/0000-0001-6379-5013>)
Maintainer: Jill Lundell <jflundell@gmail.com>
Built: R 4.5.0; ; 2025-06-05 12:46:50 UTC; windows
