Package: combi
Type: Package
Title: Compositional omics model based visual integration
Version: 1.21.0
Authors@R: 
    c(person(given = "Stijn", family = "Hawinkel", 
    email = "stijn.hawinkel@psb.ugent.be", 
    role=c("cre", "aut"), comment = c(ORCID = "0000-0002-4501-5180")))
Description: This explorative ordination method combines quasi-likelihood estimation, compositional regression models and latent variable models for integrative visualization of several omics datasets. Both unconstrained and constrained integration are available. The results are shown as interpretable, compositional multiplots.
License: GPL-2
Encoding: UTF-8
Depends: R (>= 4.0), DBI
RoxygenNote: 7.2.3
Imports: ggplot2, nleqslv, phyloseq, tensor, stats, limma, Matrix (>=
        1.6.0), BB, reshape2, alabama, cobs, Biobase, vegan, grDevices,
        graphics, methods, SummarizedExperiment
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: Metagenomics, DimensionReduction, Microbiome, Visualization,
        Metabolomics
BugReports: https://github.com/CenterForStatistics-UGent/combi/issues
git_url: https://git.bioconductor.org/packages/combi
git_branch: devel
git_last_commit: a963592
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: no
Packaged: 2025-06-04 22:15:13 UTC; biocbuild
Author: Stijn Hawinkel [cre, aut] (ORCID:
    <https://orcid.org/0000-0002-4501-5180>)
Maintainer: Stijn Hawinkel <stijn.hawinkel@psb.ugent.be>
Built: R 4.5.0; ; 2025-06-05 12:43:30 UTC; windows
