Package: bandle
Type: Package
Title: An R package for the Bayesian analysis of differential
        subcellular localisation experiments
Version: 1.13.0
Authors@R: c(person(family = "Crook", given = "Oliver M.",
		                email = "oliver.crook@stats.ox.ac.uk",
		                comment = c(ORCID = "0000-0001-5669-8506"),
		                role = c("aut", "cre")),
		         person(family = "Breckels", given = "Lisa",
		                email = "lms79@cam.ac.uk",
		                comment = c(ORCID = "0000-0001-8918-7171"),
                                role = c("aut")))
Description: The Bandle package enables the analysis and visualisation of
    differential localisation experiments using mass-spectrometry data.
    Experimental methods supported include dynamic LOPIT-DC, hyperLOPIT, 
    Dynamic Organellar Maps, Dynamic PCP. It provides Bioconductor infrastructure
    to analyse these data.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.1), S4Vectors, Biobase, MSnbase, pRoloc
Imports: Rcpp (>= 1.0.4.6), pRolocdata, lbfgs, ggplot2, dplyr, plyr,
        knitr, methods, BiocParallel, robustbase, BiocStyle,
        ggalluvial, ggrepel, tidyr, circlize, graphics, stats, utils,
        grDevices, rlang, RColorBrewer, gtools, gridExtra, coda (>=
        0.19-4)
Suggests: testthat, interp, fields, pheatmap, viridis, rmarkdown,
        spelling
VignetteBuilder: knitr
LinkingTo: Rcpp, RcppArmadillo, BH
Roxygen: list(markdown=TRUE)
RoxygenNote: 7.3.2
biocViews: Bayesian, Classification, Clustering, ImmunoOncology,
        QualityControl,DataImport, Proteomics, MassSpectrometry
BugReports: https://github.com/ococrook/bandle/issues
URL: http://github.com/ococrook/bandle
Language: en-US
git_url: https://git.bioconductor.org/packages/bandle
git_branch: devel
git_last_commit: 3ef1a7d
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.22
Date/Publication: 2025-06-04
NeedsCompilation: yes
Packaged: 2025-06-04 21:37:06 UTC; biocbuild
Author: Oliver M. Crook [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5669-8506>),
  Lisa Breckels [aut] (ORCID: <https://orcid.org/0000-0001-8918-7171>)
Maintainer: Oliver M. Crook <oliver.crook@stats.ox.ac.uk>
Built: R 4.5.0; x86_64-w64-mingw32; 2025-06-05 12:28:44 UTC; windows
Archs: x64
